Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C15orf53 (chromosome 15 open reading frame 53)

Identity

Alias_symbol (synonym)FLJ35695
Other alias-
HGNC (Hugo) C15orf53
LocusID (NCBI) 400359
Atlas_Id 60954
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 38696598 and ends at 38700038 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf53   33796
Cards
Entrez_Gene (NCBI)C15orf53  400359  chromosome 15 open reading frame 53
Aliases
GeneCards (Weizmann)C15orf53
Ensembl hg19 (Hinxton)ENSG00000175779 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175779 [Gene_View]  chr15:38696598-38700038 [Contig_View]  C15orf53 [Vega]
ICGC DataPortalENSG00000175779
TCGA cBioPortalC15orf53
AceView (NCBI)C15orf53
Genatlas (Paris)C15orf53
WikiGenes400359
SOURCE (Princeton)C15orf53
Genetics Home Reference (NIH)C15orf53
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf53  -     chr15:38696598-38700038 +  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf53  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblC15orf53 - 15q14 [CytoView hg19]  C15orf53 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIC15orf53 [Mapview hg19]  C15orf53 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093014 BC119016 BC119810
RefSeq transcript (Entrez)NM_207444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf53
Cluster EST : UnigeneHs.448785 [ NCBI ]
CGAP (NCI)Hs.448785
Alternative Splicing GalleryENSG00000175779
Gene ExpressionC15orf53 [ NCBI-GEO ]   C15orf53 [ EBI - ARRAY_EXPRESS ]   C15orf53 [ SEEK ]   C15orf53 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf53 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400359
GTEX Portal (Tissue expression)C15orf53
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAA6
Splice isoforms : SwissVarQ8NAA6
PhosPhoSitePlusQ8NAA6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C15orf53
DMDM Disease mutations400359
Blocks (Seattle)C15orf53
SuperfamilyQ8NAA6
Human Protein AtlasENSG00000175779
Peptide AtlasQ8NAA6
HPRD13418
IPIIPI00167948   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAA6
IntAct (EBI)Q8NAA6
FunCoupENSG00000175779
BioGRIDC15orf53
STRING (EMBL)C15orf53
ZODIACC15orf53
Ontologies - Pathways
QuickGOQ8NAA6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf53
Atlas of Cancer Signalling NetworkC15orf53
Wikipedia pathwaysC15orf53
Orthology - Evolution
OrthoDB400359
GeneTree (enSembl)ENSG00000175779
Phylogenetic Trees/Animal Genes : TreeFamC15orf53
HOVERGENQ8NAA6
HOGENOMQ8NAA6
Homologs : HomoloGeneC15orf53
Homology/Alignments : Family Browser (UCSC)C15orf53
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf53 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf53
dbVarC15orf53
ClinVarC15orf53
1000_GenomesC15orf53 
Exome Variant ServerC15orf53
ExAC (Exome Aggregation Consortium)C15orf53 (select the gene name)
Genetic variants : HAPMAP400359
Genomic Variants (DGV)C15orf53 [DGVbeta]
DECIPHERC15orf53 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf53 
Mutations
ICGC Data PortalC15orf53 
TCGA Data PortalC15orf53 
Broad Tumor PortalC15orf53
OASIS PortalC15orf53 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf53  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf53
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf53
DgiDB (Drug Gene Interaction Database)C15orf53
DoCM (Curated mutations)C15orf53 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf53 (select a term)
intoGenC15orf53
Cancer3DC15orf53(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf53
Genetic Testing Registry C15orf53
NextProtQ8NAA6 [Medical]
TSGene400359
GENETestsC15orf53
Target ValidationC15orf53
Huge Navigator C15orf53 [HugePedia]
snp3D : Map Gene to Disease400359
BioCentury BCIQC15orf53
ClinGenC15orf53
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400359
Chemical/Pharm GKB GenePA162378188
Clinical trialC15orf53
Miscellaneous
canSAR (ICR)C15orf53 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf53
EVEXC15orf53
GoPubMedC15orf53
iHOPC15orf53
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:25 CEST 2017

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