Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C15orf54 (chromosome 15 open reading frame 54)

Identity

Alias_symbol (synonym)FLJ39531
Other alias-
HGNC (Hugo) C15orf54
LocusID (NCBI) 400360
Atlas_Id 60955
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 39250718 and ends at 39254847 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf54   33797
Cards
Entrez_Gene (NCBI)C15orf54  400360  chromosome 15 open reading frame 54
Aliases
GeneCards (Weizmann)C15orf54
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:39250718-39254847 [Contig_View]  C15orf54 [Vega]
TCGA cBioPortalC15orf54
AceView (NCBI)C15orf54
Genatlas (Paris)C15orf54
WikiGenes400360
SOURCE (Princeton)C15orf54
Genetics Home Reference (NIH)C15orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf54  -     chr15:39250718-39254847 +  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf54  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblC15orf54 - 15q14 [CytoView hg19]  C15orf54 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIC15orf54 [Mapview hg19]  C15orf54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096850 BC137300 BC137301 BC171789 BX647708
RefSeq transcript (Entrez)NM_001302797 NM_207445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf54
Cluster EST : UnigeneHs.376109 [ NCBI ]
CGAP (NCI)Hs.376109
Gene ExpressionC15orf54 [ NCBI-GEO ]   C15orf54 [ EBI - ARRAY_EXPRESS ]   C15orf54 [ SEEK ]   C15orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400360
GTEX Portal (Tissue expression)C15orf54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8G6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8G6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8G6
Splice isoforms : SwissVarQ8N8G6
PhosPhoSitePlusQ8N8G6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C15orf54
DMDM Disease mutations400360
Blocks (Seattle)C15orf54
SuperfamilyQ8N8G6
Peptide AtlasQ8N8G6
HPRD13437
IPIIPI00167471   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8G6
IntAct (EBI)Q8N8G6
BioGRIDC15orf54
STRING (EMBL)C15orf54
ZODIACC15orf54
Ontologies - Pathways
QuickGOQ8N8G6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf54
Atlas of Cancer Signalling NetworkC15orf54
Wikipedia pathwaysC15orf54
Orthology - Evolution
OrthoDB400360
Phylogenetic Trees/Animal Genes : TreeFamC15orf54
HOVERGENQ8N8G6
HOGENOMQ8N8G6
Homologs : HomoloGeneC15orf54
Homology/Alignments : Family Browser (UCSC)C15orf54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf54
dbVarC15orf54
ClinVarC15orf54
1000_GenomesC15orf54 
Exome Variant ServerC15orf54
ExAC (Exome Aggregation Consortium)C15orf54 (select the gene name)
Genetic variants : HAPMAP400360
Genomic Variants (DGV)C15orf54 [DGVbeta]
DECIPHERC15orf54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf54 
Mutations
ICGC Data PortalC15orf54 
TCGA Data PortalC15orf54 
Broad Tumor PortalC15orf54
OASIS PortalC15orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf54
DgiDB (Drug Gene Interaction Database)C15orf54
DoCM (Curated mutations)C15orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf54 (select a term)
intoGenC15orf54
Cancer3DC15orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf54
Genetic Testing Registry C15orf54
NextProtQ8N8G6 [Medical]
TSGene400360
GENETestsC15orf54
Target ValidationC15orf54
Huge Navigator C15orf54 [HugePedia]
snp3D : Map Gene to Disease400360
BioCentury BCIQC15orf54
ClinGenC15orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400360
Chemical/Pharm GKB GenePA162378197
Clinical trialC15orf54
Miscellaneous
canSAR (ICR)C15orf54 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf54
EVEXC15orf54
GoPubMedC15orf54
iHOPC15orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:48 CEST 2017

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