Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C15orf56 (chromosome 15 open reading frame 56)

Identity

Alias_symbol (synonym)FLJ38596
Other alias-
HGNC (Hugo) C15orf56
LocusID (NCBI) 644809
Atlas_Id 60956
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40250665 and ends at 40252909 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf56   33868
Cards
Entrez_Gene (NCBI)C15orf56  644809  chromosome 15 open reading frame 56
Aliases
GeneCards (Weizmann)C15orf56
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:40250665-40252909 [Contig_View]  C15orf56 [Vega]
TCGA cBioPortalC15orf56
AceView (NCBI)C15orf56
Genatlas (Paris)C15orf56
WikiGenes644809
SOURCE (Princeton)C15orf56
Genetics Home Reference (NIH)C15orf56
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf56  -     chr15:40250665-40252909 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf56  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblC15orf56 - 15q15.1 [CytoView hg19]  C15orf56 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIC15orf56 [Mapview hg19]  C15orf56 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI300379 AK095915 BC061900 BC171826
RefSeq transcript (Entrez)NM_001039905
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf56
Cluster EST : UnigeneHs.631718 [ NCBI ]
CGAP (NCI)Hs.631718
Gene ExpressionC15orf56 [ NCBI-GEO ]   C15orf56 [ EBI - ARRAY_EXPRESS ]   C15orf56 [ SEEK ]   C15orf56 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf56 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644809
GTEX Portal (Tissue expression)C15orf56
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N910
Splice isoforms : SwissVarQ8N910
PhosPhoSitePlusQ8N910
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C15orf56
DMDM Disease mutations644809
Blocks (Seattle)C15orf56
SuperfamilyQ8N910
Peptide AtlasQ8N910
IPIIPI00167541   
Protein Interaction databases
DIP (DOE-UCLA)Q8N910
IntAct (EBI)Q8N910
BioGRIDC15orf56
STRING (EMBL)C15orf56
ZODIACC15orf56
Ontologies - Pathways
QuickGOQ8N910
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf56
Atlas of Cancer Signalling NetworkC15orf56
Wikipedia pathwaysC15orf56
Orthology - Evolution
OrthoDB644809
Phylogenetic Trees/Animal Genes : TreeFamC15orf56
HOVERGENQ8N910
HOGENOMQ8N910
Homologs : HomoloGeneC15orf56
Homology/Alignments : Family Browser (UCSC)C15orf56
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf56 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf56
dbVarC15orf56
ClinVarC15orf56
1000_GenomesC15orf56 
Exome Variant ServerC15orf56
ExAC (Exome Aggregation Consortium)C15orf56 (select the gene name)
Genetic variants : HAPMAP644809
Genomic Variants (DGV)C15orf56 [DGVbeta]
DECIPHERC15orf56 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf56 
Mutations
ICGC Data PortalC15orf56 
TCGA Data PortalC15orf56 
Broad Tumor PortalC15orf56
OASIS PortalC15orf56 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf56  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf56
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf56
DgiDB (Drug Gene Interaction Database)C15orf56
DoCM (Curated mutations)C15orf56 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf56 (select a term)
intoGenC15orf56
Cancer3DC15orf56(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf56
Genetic Testing Registry C15orf56
NextProtQ8N910 [Medical]
TSGene644809
GENETestsC15orf56
Target ValidationC15orf56
Huge Navigator C15orf56 [HugePedia]
snp3D : Map Gene to Disease644809
BioCentury BCIQC15orf56
ClinGenC15orf56
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644809
Chemical/Pharm GKB GenePA162378225
Clinical trialC15orf56
Miscellaneous
canSAR (ICR)C15orf56 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf56
EVEXC15orf56
GoPubMedC15orf56
iHOPC15orf56
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:48 CEST 2017

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