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C15orf57 (chromosome 15 open reading frame 57)

Identity

Alias_namesCCDC32
coiled-coil domain containing 32
Alias_symbol (synonym)MGC20481
Other alias
HGNC (Hugo) C15orf57
LocusID (NCBI) 90416
Atlas_Id 60957
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40845112 and ends at 40857256 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C15orf57 (15q15.1) / CBX3 (7p15.2)C15orf57 (15q15.1) / SFTPC (8p21.3)CBX3 (7p15.2) / C15orf57 (15q15.1)
IQGAP2 (5q13.3) / C15orf57 (15q15.1)RPL18 (19q13.33) / C15orf57 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf57   28295
Cards
Entrez_Gene (NCBI)C15orf57  90416  chromosome 15 open reading frame 57
AliasesCCDC32
GeneCards (Weizmann)C15orf57
Ensembl hg19 (Hinxton)ENSG00000128891 [Gene_View]  chr15:40845112-40857256 [Contig_View]  C15orf57 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128891 [Gene_View]  chr15:40845112-40857256 [Contig_View]  C15orf57 [Vega]
ICGC DataPortalENSG00000128891
TCGA cBioPortalC15orf57
AceView (NCBI)C15orf57
Genatlas (Paris)C15orf57
WikiGenes90416
SOURCE (Princeton)C15orf57
Genetics Home Reference (NIH)C15orf57
Genomic and cartography
GoldenPath hg19 (UCSC)C15orf57  -     chr15:40845112-40857256 -  15q15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C15orf57  -     15q15.1   [Description]    (hg38-Dec_2013)
EnsemblC15orf57 - 15q15.1 [CytoView hg19]  C15orf57 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIC15orf57 [Mapview hg19]  C15orf57 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092214 AK098781 AK293079 AK312842 AL832032
RefSeq transcript (Entrez)NM_001080791 NM_001080792 NM_001289132 NM_052849
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)C15orf57
Cluster EST : UnigeneHs.654661 [ NCBI ]
CGAP (NCI)Hs.654661
Alternative Splicing GalleryENSG00000128891
Gene ExpressionC15orf57 [ NCBI-GEO ]   C15orf57 [ EBI - ARRAY_EXPRESS ]   C15orf57 [ SEEK ]   C15orf57 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf57 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90416
GTEX Portal (Tissue expression)C15orf57
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV29   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV29  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV29
Splice isoforms : SwissVarQ9BV29
PhosPhoSitePlusQ9BV29
Domains : Interpro (EBI)CCDC32   
Domain families : Pfam (Sanger)CCDC32 (PF14989)   
Domain families : Pfam (NCBI)pfam14989   
Conserved Domain (NCBI)C15orf57
DMDM Disease mutations90416
Blocks (Seattle)C15orf57
SuperfamilyQ9BV29
Human Protein AtlasENSG00000128891
Peptide AtlasQ9BV29
HPRD14473
IPIIPI00402007   IPI00478351   IPI00794516   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV29
IntAct (EBI)Q9BV29
FunCoupENSG00000128891
BioGRIDC15orf57
STRING (EMBL)C15orf57
ZODIACC15orf57
Ontologies - Pathways
QuickGOQ9BV29
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf57
Atlas of Cancer Signalling NetworkC15orf57
Wikipedia pathwaysC15orf57
Orthology - Evolution
OrthoDB90416
GeneTree (enSembl)ENSG00000128891
Phylogenetic Trees/Animal Genes : TreeFamC15orf57
HOVERGENQ9BV29
HOGENOMQ9BV29
Homologs : HomoloGeneC15orf57
Homology/Alignments : Family Browser (UCSC)C15orf57
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf57 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf57
dbVarC15orf57
ClinVarC15orf57
1000_GenomesC15orf57 
Exome Variant ServerC15orf57
ExAC (Exome Aggregation Consortium)C15orf57 (select the gene name)
Genetic variants : HAPMAP90416
Genomic Variants (DGV)C15orf57 [DGVbeta]
DECIPHER (Syndromes)15:40845112-40857256  ENSG00000128891
CONAN: Copy Number AnalysisC15orf57 
Mutations
ICGC Data PortalC15orf57 
TCGA Data PortalC15orf57 
Broad Tumor PortalC15orf57
OASIS PortalC15orf57 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf57  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf57
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf57
DgiDB (Drug Gene Interaction Database)C15orf57
DoCM (Curated mutations)C15orf57 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf57 (select a term)
intoGenC15orf57
Cancer3DC15orf57(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf57
Genetic Testing Registry C15orf57
NextProtQ9BV29 [Medical]
TSGene90416
GENETestsC15orf57
Huge Navigator C15orf57 [HugePedia]
snp3D : Map Gene to Disease90416
BioCentury BCIQC15orf57
ClinGenC15orf57
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90416
Chemical/Pharm GKB GenePA162378234
Clinical trialC15orf57
Miscellaneous
canSAR (ICR)C15orf57 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf57
EVEXC15orf57
GoPubMedC15orf57
iHOPC15orf57
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:34 CET 2017

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