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C15orf59 (chromosome 15 open reading frame 59)

Identity

Alias_symbol (synonym)MGC131524
LOC388135
Other aliasINSYN1
HGNC (Hugo) C15orf59
LocusID (NCBI) 388135
Atlas_Id 60958
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 73735431 and ends at 73751475 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLN6 (15q23) / C15orf59 (15q24.1)VPS13C (15q22.2) / C15orf59 (15q24.1)VPS13C C15orf59
CLN6 C15orf59

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf59   33753
Cards
Entrez_Gene (NCBI)C15orf59  388135  chromosome 15 open reading frame 59
AliasesINSYN1
GeneCards (Weizmann)C15orf59
Ensembl hg19 (Hinxton)ENSG00000205363 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205363 [Gene_View]  chr15:73735431-73751475 [Contig_View]  C15orf59 [Vega]
ICGC DataPortalENSG00000205363
TCGA cBioPortalC15orf59
AceView (NCBI)C15orf59
Genatlas (Paris)C15orf59
WikiGenes388135
SOURCE (Princeton)C15orf59
Genetics Home Reference (NIH)C15orf59
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf59  -     chr15:73735431-73751475 -  15q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf59  -     15q24.1   [Description]    (hg19-Feb_2009)
EnsemblC15orf59 - 15q24.1 [CytoView hg19]  C15orf59 - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIC15orf59 [Mapview hg19]  C15orf59 [Mapview hg38]
OMIM617128   
Gene and transcription
Genbank (Entrez)AK124841 AL360257 BC111368 CK823338 DR003635
RefSeq transcript (Entrez)NM_001039614 NM_001303254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf59
Cluster EST : UnigeneHs.213493 [ NCBI ]
CGAP (NCI)Hs.213493
Alternative Splicing GalleryENSG00000205363
Gene ExpressionC15orf59 [ NCBI-GEO ]   C15orf59 [ EBI - ARRAY_EXPRESS ]   C15orf59 [ SEEK ]   C15orf59 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf59 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388135
GTEX Portal (Tissue expression)C15orf59
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2T9L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2T9L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2T9L4
Splice isoforms : SwissVarQ2T9L4
PhosPhoSitePlusQ2T9L4
Domains : Interpro (EBI)DUF4589   
Domain families : Pfam (Sanger)DUF4589 (PF15252)   
Domain families : Pfam (NCBI)pfam15252   
Conserved Domain (NCBI)C15orf59
DMDM Disease mutations388135
Blocks (Seattle)C15orf59
SuperfamilyQ2T9L4
Human Protein AtlasENSG00000205363
Peptide AtlasQ2T9L4
IPIIPI00376058   
Protein Interaction databases
DIP (DOE-UCLA)Q2T9L4
IntAct (EBI)Q2T9L4
FunCoupENSG00000205363
BioGRIDC15orf59
STRING (EMBL)C15orf59
ZODIACC15orf59
Ontologies - Pathways
QuickGOQ2T9L4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC15orf59
Atlas of Cancer Signalling NetworkC15orf59
Wikipedia pathwaysC15orf59
Orthology - Evolution
OrthoDB388135
GeneTree (enSembl)ENSG00000205363
Phylogenetic Trees/Animal Genes : TreeFamC15orf59
HOVERGENQ2T9L4
HOGENOMQ2T9L4
Homologs : HomoloGeneC15orf59
Homology/Alignments : Family Browser (UCSC)C15orf59
Gene fusions - Rearrangements
Fusion: TCGAVPS13C C15orf59
Fusion: TCGACLN6 C15orf59
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf59
dbVarC15orf59
ClinVarC15orf59
1000_GenomesC15orf59 
Exome Variant ServerC15orf59
ExAC (Exome Aggregation Consortium)C15orf59 (select the gene name)
Genetic variants : HAPMAP388135
Genomic Variants (DGV)C15orf59 [DGVbeta]
DECIPHERC15orf59 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf59 
Mutations
ICGC Data PortalC15orf59 
TCGA Data PortalC15orf59 
Broad Tumor PortalC15orf59
OASIS PortalC15orf59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf59  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf59
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf59
DgiDB (Drug Gene Interaction Database)C15orf59
DoCM (Curated mutations)C15orf59 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf59 (select a term)
intoGenC15orf59
Cancer3DC15orf59(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617128   
Orphanet
MedgenC15orf59
Genetic Testing Registry C15orf59
NextProtQ2T9L4 [Medical]
TSGene388135
GENETestsC15orf59
Target ValidationC15orf59
Huge Navigator C15orf59 [HugePedia]
snp3D : Map Gene to Disease388135
BioCentury BCIQC15orf59
ClinGenC15orf59
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388135
Chemical/Pharm GKB GenePA162378260
Clinical trialC15orf59
Miscellaneous
canSAR (ICR)C15orf59 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf59
EVEXC15orf59
GoPubMedC15orf59
iHOPC15orf59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:48 CEST 2017

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