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C15orf61 (chromosome 15 open reading frame 61)

Identity

Alias_symbol (synonym)LOC145853
Other alias-
HGNC (Hugo) C15orf61
LocusID (NCBI) 145853
Atlas_Id 60959
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 67521184 and ends at 67527303 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf61   34453
Cards
Entrez_Gene (NCBI)C15orf61  145853  chromosome 15 open reading frame 61
Aliases
GeneCards (Weizmann)C15orf61
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:67521184-67527303 [Contig_View]  C15orf61 [Vega]
TCGA cBioPortalC15orf61
AceView (NCBI)C15orf61
Genatlas (Paris)C15orf61
WikiGenes145853
SOURCE (Princeton)C15orf61
Genetics Home Reference (NIH)C15orf61
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf61  -     chr15:67521184-67527303 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf61  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblC15orf61 - 15q23 [CytoView hg19]  C15orf61 - 15q23 [CytoView hg38]
Mapping of homologs : NCBIC15orf61 [Mapview hg19]  C15orf61 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294012 AY726587 BM664696 CK903599
RefSeq transcript (Entrez)NM_001143936
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf61
Cluster EST : UnigeneHs.438385 [ NCBI ]
CGAP (NCI)Hs.438385
Gene ExpressionC15orf61 [ NCBI-GEO ]   C15orf61 [ EBI - ARRAY_EXPRESS ]   C15orf61 [ SEEK ]   C15orf61 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf61 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145853
GTEX Portal (Tissue expression)C15orf61
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNL5
Splice isoforms : SwissVarA6NNL5
PhosPhoSitePlusA6NNL5
Domains : Interpro (EBI)DUF4528   
Domain families : Pfam (Sanger)DUF4528 (PF15031)   
Domain families : Pfam (NCBI)pfam15031   
Conserved Domain (NCBI)C15orf61
DMDM Disease mutations145853
Blocks (Seattle)C15orf61
SuperfamilyA6NNL5
Peptide AtlasA6NNL5
IPIIPI00921537   
Protein Interaction databases
DIP (DOE-UCLA)A6NNL5
IntAct (EBI)A6NNL5
BioGRIDC15orf61
STRING (EMBL)C15orf61
ZODIACC15orf61
Ontologies - Pathways
QuickGOA6NNL5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC15orf61
Atlas of Cancer Signalling NetworkC15orf61
Wikipedia pathwaysC15orf61
Orthology - Evolution
OrthoDB145853
Phylogenetic Trees/Animal Genes : TreeFamC15orf61
HOVERGENA6NNL5
HOGENOMA6NNL5
Homologs : HomoloGeneC15orf61
Homology/Alignments : Family Browser (UCSC)C15orf61
Gene fusions - Rearrangements
Fusion: Tumor Portal C15orf61
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf61 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf61
dbVarC15orf61
ClinVarC15orf61
1000_GenomesC15orf61 
Exome Variant ServerC15orf61
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP145853
Genomic Variants (DGV)C15orf61 [DGVbeta]
DECIPHERC15orf61 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf61 
Mutations
ICGC Data PortalC15orf61 
TCGA Data PortalC15orf61 
Broad Tumor PortalC15orf61
OASIS PortalC15orf61 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf61  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf61
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf61
DgiDB (Drug Gene Interaction Database)C15orf61
DoCM (Curated mutations)C15orf61 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf61 (select a term)
intoGenC15orf61
Cancer3DC15orf61(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf61
Genetic Testing Registry C15orf61
NextProtA6NNL5 [Medical]
TSGene145853
GENETestsC15orf61
Target ValidationC15orf61
Huge Navigator C15orf61 [HugePedia]
snp3D : Map Gene to Disease145853
BioCentury BCIQC15orf61
ClinGenC15orf61
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD145853
Chemical/Pharm GKB GenePA162378286
Clinical trialC15orf61
Miscellaneous
canSAR (ICR)C15orf61 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf61
EVEXC15orf61
GoPubMedC15orf61
iHOPC15orf61
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:47 CET 2017

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