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C15orf62 (chromosome 15 open reading frame 62)

Identity

Alias_symbol (synonym)LOC643338
Other alias-
HGNC (Hugo) C15orf62
LocusID (NCBI) 643338
Atlas_Id 60960
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 40769961 and ends at 40772449 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C15orf62   34489
Cards
Entrez_Gene (NCBI)C15orf62  643338  chromosome 15 open reading frame 62
Aliases
GeneCards (Weizmann)C15orf62
Ensembl hg19 (Hinxton)ENSG00000188277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188277 [Gene_View]  chr15:40769961-40772449 [Contig_View]  C15orf62 [Vega]
ICGC DataPortalENSG00000188277
TCGA cBioPortalC15orf62
AceView (NCBI)C15orf62
Genatlas (Paris)C15orf62
WikiGenes643338
SOURCE (Princeton)C15orf62
Genetics Home Reference (NIH)C15orf62
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf62  -     chr15:40769961-40772449 +  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf62  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblC15orf62 - 15q15.1 [CytoView hg19]  C15orf62 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIC15orf62 [Mapview hg19]  C15orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291344 BC027487 BM706032 CN478592 DA761028
RefSeq transcript (Entrez)NM_001130448
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf62
Cluster EST : UnigeneHs.631715 [ NCBI ]
CGAP (NCI)Hs.631715
Alternative Splicing GalleryENSG00000188277
Gene ExpressionC15orf62 [ NCBI-GEO ]   C15orf62 [ EBI - ARRAY_EXPRESS ]   C15orf62 [ SEEK ]   C15orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643338
GTEX Portal (Tissue expression)C15orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K5M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K5M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K5M9
Splice isoforms : SwissVarA8K5M9
PhosPhoSitePlusA8K5M9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C15orf62
DMDM Disease mutations643338
Blocks (Seattle)C15orf62
SuperfamilyA8K5M9
Human Protein AtlasENSG00000188277
Peptide AtlasA8K5M9
IPIIPI00411437   
Protein Interaction databases
DIP (DOE-UCLA)A8K5M9
IntAct (EBI)A8K5M9
FunCoupENSG00000188277
BioGRIDC15orf62
STRING (EMBL)C15orf62
ZODIACC15orf62
Ontologies - Pathways
QuickGOA8K5M9
Ontology : AmiGOGTPase activator activity  cytoplasm  mitochondrion  plasma membrane  Rho protein signal transduction  regulation of cell shape  GTP-Rho binding  positive regulation of actin filament polymerization  positive regulation of pseudopodium assembly  positive regulation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  cytoplasm  mitochondrion  plasma membrane  Rho protein signal transduction  regulation of cell shape  GTP-Rho binding  positive regulation of actin filament polymerization  positive regulation of pseudopodium assembly  positive regulation of GTPase activity  
NDEx NetworkC15orf62
Atlas of Cancer Signalling NetworkC15orf62
Wikipedia pathwaysC15orf62
Orthology - Evolution
OrthoDB643338
GeneTree (enSembl)ENSG00000188277
Phylogenetic Trees/Animal Genes : TreeFamC15orf62
HOVERGENA8K5M9
HOGENOMA8K5M9
Homologs : HomoloGeneC15orf62
Homology/Alignments : Family Browser (UCSC)C15orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C15orf62
dbVarC15orf62
ClinVarC15orf62
1000_GenomesC15orf62 
Exome Variant ServerC15orf62
ExAC (Exome Aggregation Consortium)C15orf62 (select the gene name)
Genetic variants : HAPMAP643338
Genomic Variants (DGV)C15orf62 [DGVbeta]
DECIPHERC15orf62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf62 
Mutations
ICGC Data PortalC15orf62 
TCGA Data PortalC15orf62 
Broad Tumor PortalC15orf62
OASIS PortalC15orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC15orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC15orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C15orf62
DgiDB (Drug Gene Interaction Database)C15orf62
DoCM (Curated mutations)C15orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf62 (select a term)
intoGenC15orf62
Cancer3DC15orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC15orf62
Genetic Testing Registry C15orf62
NextProtA8K5M9 [Medical]
TSGene643338
GENETestsC15orf62
Target ValidationC15orf62
Huge Navigator C15orf62 [HugePedia]
snp3D : Map Gene to Disease643338
BioCentury BCIQC15orf62
ClinGenC15orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643338
Chemical/Pharm GKB GenePA162378296
Clinical trialC15orf62
Miscellaneous
canSAR (ICR)C15orf62 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC15orf62
EVEXC15orf62
GoPubMedC15orf62
iHOPC15orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:27 CEST 2017

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