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C16orf13 (chromosome 16 open reading frame 13)

Identity

Other aliasJFP2
HGNC (Hugo) C16orf13
LocusID (NCBI) 84326
Atlas_Id 60961
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 684427 and ends at 686366 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C16orf13/OK () / SW-cl.16 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf13   14141
Cards
Entrez_Gene (NCBI)C16orf13  84326  chromosome 16 open reading frame 13
AliasesJFP2
GeneCards (Weizmann)C16orf13
Ensembl hg19 (Hinxton)ENSG00000130731 [Gene_View]  chr16:684427-686366 [Contig_View]  C16orf13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000130731 [Gene_View]  chr16:684427-686366 [Contig_View]  C16orf13 [Vega]
ICGC DataPortalENSG00000130731
TCGA cBioPortalC16orf13
AceView (NCBI)C16orf13
Genatlas (Paris)C16orf13
WikiGenes84326
SOURCE (Princeton)C16orf13
Genetics Home Reference (NIH)C16orf13
Genomic and cartography
GoldenPath hg19 (UCSC)C16orf13  -     chr16:684427-686366 -  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C16orf13  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblC16orf13 - 16p13.3 [CytoView hg19]  C16orf13 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf13 [Mapview hg19]  C16orf13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI146806 AK057077 AK293046 AK294482 AK295628
RefSeq transcript (Entrez)NM_001040160 NM_001040161 NM_001040162 NM_001040163 NM_001040164 NM_001040165 NM_001040166 NM_001288710 NM_032366
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)C16orf13
Cluster EST : UnigeneHs.239500 [ NCBI ]
CGAP (NCI)Hs.239500
Alternative Splicing GalleryENSG00000130731
Gene ExpressionC16orf13 [ NCBI-GEO ]   C16orf13 [ EBI - ARRAY_EXPRESS ]   C16orf13 [ SEEK ]   C16orf13 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84326
GTEX Portal (Tissue expression)C16orf13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96S19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96S19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96S19
Splice isoforms : SwissVarQ96S19
PhosPhoSitePlusQ96S19
Domains : Interpro (EBI)DUF938    SAM-dependent_MTases   
Domain families : Pfam (Sanger)DUF938 (PF06080)   
Domain families : Pfam (NCBI)pfam06080   
Conserved Domain (NCBI)C16orf13
DMDM Disease mutations84326
Blocks (Seattle)C16orf13
SuperfamilyQ96S19
Human Protein AtlasENSG00000130731
Peptide AtlasQ96S19
HPRD17482
IPIIPI00745105   IPI00065475   IPI00893549   IPI00746178   IPI00747270   IPI00749346   
Protein Interaction databases
DIP (DOE-UCLA)Q96S19
IntAct (EBI)Q96S19
FunCoupENSG00000130731
BioGRIDC16orf13
STRING (EMBL)C16orf13
ZODIACC16orf13
Ontologies - Pathways
QuickGOQ96S19
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf13
Atlas of Cancer Signalling NetworkC16orf13
Wikipedia pathwaysC16orf13
Orthology - Evolution
OrthoDB84326
GeneTree (enSembl)ENSG00000130731
Phylogenetic Trees/Animal Genes : TreeFamC16orf13
HOVERGENQ96S19
HOGENOMQ96S19
Homologs : HomoloGeneC16orf13
Homology/Alignments : Family Browser (UCSC)C16orf13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf13
dbVarC16orf13
ClinVarC16orf13
1000_GenomesC16orf13 
Exome Variant ServerC16orf13
ExAC (Exome Aggregation Consortium)C16orf13 (select the gene name)
Genetic variants : HAPMAP84326
Genomic Variants (DGV)C16orf13 [DGVbeta]
DECIPHER (Syndromes)16:684427-686366  ENSG00000130731
CONAN: Copy Number AnalysisC16orf13 
Mutations
ICGC Data PortalC16orf13 
TCGA Data PortalC16orf13 
Broad Tumor PortalC16orf13
OASIS PortalC16orf13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf13
DgiDB (Drug Gene Interaction Database)C16orf13
DoCM (Curated mutations)C16orf13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf13 (select a term)
intoGenC16orf13
Cancer3DC16orf13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf13
Genetic Testing Registry C16orf13
NextProtQ96S19 [Medical]
TSGene84326
GENETestsC16orf13
Huge Navigator C16orf13 [HugePedia]
snp3D : Map Gene to Disease84326
BioCentury BCIQC16orf13
ClinGenC16orf13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84326
Chemical/Pharm GKB GenePA25526
Clinical trialC16orf13
Miscellaneous
canSAR (ICR)C16orf13 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf13
EVEXC16orf13
GoPubMedC16orf13
iHOPC16orf13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:35 CET 2017

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