Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf45 (-)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 89927
Atlas_Id 54165
Location -  [Link to chromosome band ]
Location_base_pair Starts at 15434468 and ends at 15588259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C16orf45 (16p13.11) / ABCC1 (16p13.11)C16orf45 (16p13.11) / MAGEF1 (3q27.1)C16orf45 (16p13.11) / PNCK (Xq28)
C16orf45 (16p13.11) / POMT2 (14q24.3)C16orf45 (16p13.11) / RHBDL2 (1p34.3)KLHL3 (5q31.2) / C16orf45 (16p13.11)
RELA (11q13.1) / C16orf45 (16p13.11)STAG2 (Xq25) / C16orf45 (16p13.11)C16orf45 16p13.11 / POMT2 14q24.3
C16orf45 16p13.11 / RHBDL2 1p34.3KLHL3 5q31.2 / C16orf45 16p13.11STAG2 Xq25 / C16orf45 16p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]

Solid Tumors TT_t0116p34p13ID104207 TT_t0516q31p13ID106545 TT_t0X16q25p13ID108641 TT_t1416q24p13ID101861


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)C16orf45  89927  -
Aliases
GeneCards (Weizmann)C16orf45
Ensembl hg19 (Hinxton)ENSG00000166780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166780 [Gene_View]  ENSG00000166780 [Sequence]  chr16:15434468-15588259 [Contig_View]  C16orf45 [Vega]
ICGC DataPortalENSG00000166780
TCGA cBioPortalC16orf45
AceView (NCBI)C16orf45
Genatlas (Paris)C16orf45
WikiGenes89927
SOURCE (Princeton)C16orf45
Genetics Home Reference (NIH)C16orf45
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf45  -     chr16:15434468-15588259 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf45  -     -   [Description]    (hg19-Feb_2009)
GoldenPathC16orf45 - - [CytoView hg19]  C16orf45 - - [CytoView hg38]
ImmunoBaseENSG00000166780
Mapping of homologs : NCBIC16orf45 [Mapview hg19]  C16orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf45
Alternative Splicing GalleryENSG00000166780
Gene ExpressionC16orf45 [ NCBI-GEO ]   C16orf45 [ EBI - ARRAY_EXPRESS ]   C16orf45 [ SEEK ]   C16orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)89927
GTEX Portal (Tissue expression)C16orf45
Human Protein AtlasENSG00000166780-C16orf45 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf45
DMDM Disease mutations89927
Blocks (Seattle)C16orf45
Human Protein Atlas [tissue]ENSG00000166780-C16orf45 [tissue]
HPRD12382
IPIIPI00062730   IPI00409632   
Protein Interaction databases
FunCoupENSG00000166780
BioGRIDC16orf45
STRING (EMBL)C16orf45
ZODIACC16orf45
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease89927
BioCentury BCIQC16orf45
ClinGenC16orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89927
Clinical trialC16orf45
Miscellaneous
canSAR (ICR)C16orf45 (select the gene name)
DataMed IndexC16orf45
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf45
EVEXC16orf45
GoPubMedC16orf45
iHOPC16orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Feb 3 14:49:50 CET 2020

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