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C16orf45 (chromosome 16 open reading frame 45)

Identity

Alias_symbol (synonym)FLJ32618
Other aliasMINP
HGNC (Hugo) C16orf45
LocusID (NCBI) 89927
Atlas_Id 54165
Location 16p13.11  [Link to chromosome band 16p13]
Location_base_pair Starts at 15502266 and ends at 15588259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf45 (16p13.11) / ABCC1 (16p13.11)C16orf45 (16p13.11) / MAGEF1 (3q27.1)C16orf45 (16p13.11) / PNCK (Xq28)
C16orf45 (16p13.11) / POMT2 (14q24.3)C16orf45 (16p13.11) / RHBDL2 (1p34.3)KLHL3 (5q31.2) / C16orf45 (16p13.11)
RELA (11q13.1) / C16orf45 (16p13.11)STAG2 (Xq25) / C16orf45 (16p13.11)C16orf45 16p13.11 / POMT2 14q24.3
C16orf45 16p13.11 / RHBDL2 1p34.3KLHL3 5q31.2 / C16orf45 16p13.11STAG2 Xq25 / C16orf45 16p13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf45   19213
Cards
Entrez_Gene (NCBI)C16orf45  89927  chromosome 16 open reading frame 45
AliasesMINP
GeneCards (Weizmann)C16orf45
Ensembl hg19 (Hinxton)ENSG00000166780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166780 [Gene_View]  chr16:15502266-15588259 [Contig_View]  C16orf45 [Vega]
ICGC DataPortalENSG00000166780
TCGA cBioPortalC16orf45
AceView (NCBI)C16orf45
Genatlas (Paris)C16orf45
WikiGenes89927
SOURCE (Princeton)C16orf45
Genetics Home Reference (NIH)C16orf45
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf45  -     chr16:15502266-15588259 +  16p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf45  -     16p13.11   [Description]    (hg19-Feb_2009)
EnsemblC16orf45 - 16p13.11 [CytoView hg19]  C16orf45 - 16p13.11 [CytoView hg38]
Mapping of homologs : NCBIC16orf45 [Mapview hg19]  C16orf45 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI377644 AK057180 AK293431 BC008967 BC023603
RefSeq transcript (Entrez)NM_001142469 NM_033201
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187607
Consensus coding sequences : CCDS (NCBI)C16orf45
Cluster EST : UnigeneHs.401798 [ NCBI ]
CGAP (NCI)Hs.401798
Alternative Splicing GalleryENSG00000166780
Gene ExpressionC16orf45 [ NCBI-GEO ]   C16orf45 [ EBI - ARRAY_EXPRESS ]   C16orf45 [ SEEK ]   C16orf45 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf45 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89927
GTEX Portal (Tissue expression)C16orf45
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MC5
Splice isoforms : SwissVarQ96MC5
PhosPhoSitePlusQ96MC5
Domains : Interpro (EBI)DUF3585   
Domain families : Pfam (Sanger)DUF3585 (PF12130)   
Domain families : Pfam (NCBI)pfam12130   
Conserved Domain (NCBI)C16orf45
DMDM Disease mutations89927
Blocks (Seattle)C16orf45
SuperfamilyQ96MC5
Human Protein AtlasENSG00000166780
Peptide AtlasQ96MC5
HPRD12382
IPIIPI00062730   IPI00409632   
Protein Interaction databases
DIP (DOE-UCLA)Q96MC5
IntAct (EBI)Q96MC5
FunCoupENSG00000166780
BioGRIDC16orf45
STRING (EMBL)C16orf45
ZODIACC16orf45
Ontologies - Pathways
QuickGOQ96MC5
Ontology : AmiGOprotein binding  negative regulation of microtubule depolymerization  microtubule cytoskeleton  negative regulation of cell motility involved in cerebral cortex radial glia guided migration  
Ontology : EGO-EBIprotein binding  negative regulation of microtubule depolymerization  microtubule cytoskeleton  negative regulation of cell motility involved in cerebral cortex radial glia guided migration  
NDEx NetworkC16orf45
Atlas of Cancer Signalling NetworkC16orf45
Wikipedia pathwaysC16orf45
Orthology - Evolution
OrthoDB89927
GeneTree (enSembl)ENSG00000166780
Phylogenetic Trees/Animal Genes : TreeFamC16orf45
HOVERGENQ96MC5
HOGENOMQ96MC5
Homologs : HomoloGeneC16orf45
Homology/Alignments : Family Browser (UCSC)C16orf45
Gene fusions - Rearrangements
Fusion : MitelmanC16orf45/ABCC1 [16p13.11/16p13.11]  
Fusion : MitelmanC16orf45/POMT2 [16p13.11/14q24.3]  [t(14;16)(q24;p13)]  
Fusion : MitelmanC16orf45/RHBDL2 [16p13.11/1p34.3]  [t(1;16)(p34;p13)]  
Fusion : MitelmanKLHL3/C16orf45 [5q31.2/16p13.11]  [t(5;16)(q31;p13)]  
Fusion : MitelmanSTAG2/C16orf45 [Xq25/16p13.11]  [t(X;16)(q25;p13)]  
Fusion: TCGAC16orf45 16p13.11 POMT2 14q24.3 BRCA
Fusion: TCGAC16orf45 16p13.11 RHBDL2 1p34.3 BRCA
Fusion: TCGAKLHL3 5q31.2 C16orf45 16p13.11 OV
Fusion: TCGASTAG2 Xq25 C16orf45 16p13.11 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf45 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf45
dbVarC16orf45
ClinVarC16orf45
1000_GenomesC16orf45 
Exome Variant ServerC16orf45
ExAC (Exome Aggregation Consortium)C16orf45 (select the gene name)
Genetic variants : HAPMAP89927
Genomic Variants (DGV)C16orf45 [DGVbeta]
DECIPHERC16orf45 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf45 
Mutations
ICGC Data PortalC16orf45 
TCGA Data PortalC16orf45 
Broad Tumor PortalC16orf45
OASIS PortalC16orf45 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf45  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf45
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf45
DgiDB (Drug Gene Interaction Database)C16orf45
DoCM (Curated mutations)C16orf45 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf45 (select a term)
intoGenC16orf45
Cancer3DC16orf45(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf45
Genetic Testing Registry C16orf45
NextProtQ96MC5 [Medical]
TSGene89927
GENETestsC16orf45
Target ValidationC16orf45
Huge Navigator C16orf45 [HugePedia]
snp3D : Map Gene to Disease89927
BioCentury BCIQC16orf45
ClinGenC16orf45
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89927
Chemical/Pharm GKB GenePA134973206
Clinical trialC16orf45
Miscellaneous
canSAR (ICR)C16orf45 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf45
EVEXC16orf45
GoPubMedC16orf45
iHOPC16orf45
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:23 CEST 2017

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