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C16orf46 (chromosome 16 open reading frame 46)

Identity

Alias_symbol (synonym)FLJ32702
Other alias-
HGNC (Hugo) C16orf46
LocusID (NCBI) 123775
Atlas_Id 60962
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 81053497 and ends at 81077267 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
H1F0 (22q13.1) / C16orf46 (16q23.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf46   26525
Cards
Entrez_Gene (NCBI)C16orf46  123775  chromosome 16 open reading frame 46
Aliases
GeneCards (Weizmann)C16orf46
Ensembl hg19 (Hinxton)ENSG00000166455 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166455 [Gene_View]  chr16:81053497-81077267 [Contig_View]  C16orf46 [Vega]
ICGC DataPortalENSG00000166455
TCGA cBioPortalC16orf46
AceView (NCBI)C16orf46
Genatlas (Paris)C16orf46
WikiGenes123775
SOURCE (Princeton)C16orf46
Genetics Home Reference (NIH)C16orf46
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf46  -     chr16:81053497-81077267 -  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf46  -     16q23.2   [Description]    (hg19-Feb_2009)
EnsemblC16orf46 - 16q23.2 [CytoView hg19]  C16orf46 - 16q23.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf46 [Mapview hg19]  C16orf46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA905107 AK057264 AK295411 BC064143 DA525473
RefSeq transcript (Entrez)NM_001100873 NM_152337
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf46
Cluster EST : UnigeneHs.658684 [ NCBI ]
CGAP (NCI)Hs.658684
Alternative Splicing GalleryENSG00000166455
Gene ExpressionC16orf46 [ NCBI-GEO ]   C16orf46 [ EBI - ARRAY_EXPRESS ]   C16orf46 [ SEEK ]   C16orf46 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123775
GTEX Portal (Tissue expression)C16orf46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P387   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P387  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P387
Splice isoforms : SwissVarQ6P387
PhosPhoSitePlusQ6P387
Domains : Interpro (EBI)DUF4529   
Domain families : Pfam (Sanger)DUF4529 (PF15032)   
Domain families : Pfam (NCBI)pfam15032   
Conserved Domain (NCBI)C16orf46
DMDM Disease mutations123775
Blocks (Seattle)C16orf46
SuperfamilyQ6P387
Human Protein AtlasENSG00000166455
Peptide AtlasQ6P387
HPRD08730
IPIIPI00066620   IPI00647553   IPI01010836   
Protein Interaction databases
DIP (DOE-UCLA)Q6P387
IntAct (EBI)Q6P387
FunCoupENSG00000166455
BioGRIDC16orf46
STRING (EMBL)C16orf46
ZODIACC16orf46
Ontologies - Pathways
QuickGOQ6P387
Ontology : AmiGOnucleus  nucleoplasm  cytosol  
Ontology : EGO-EBInucleus  nucleoplasm  cytosol  
NDEx NetworkC16orf46
Atlas of Cancer Signalling NetworkC16orf46
Wikipedia pathwaysC16orf46
Orthology - Evolution
OrthoDB123775
GeneTree (enSembl)ENSG00000166455
Phylogenetic Trees/Animal Genes : TreeFamC16orf46
HOVERGENQ6P387
HOGENOMQ6P387
Homologs : HomoloGeneC16orf46
Homology/Alignments : Family Browser (UCSC)C16orf46
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf46
dbVarC16orf46
ClinVarC16orf46
1000_GenomesC16orf46 
Exome Variant ServerC16orf46
ExAC (Exome Aggregation Consortium)C16orf46 (select the gene name)
Genetic variants : HAPMAP123775
Genomic Variants (DGV)C16orf46 [DGVbeta]
DECIPHERC16orf46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf46 
Mutations
ICGC Data PortalC16orf46 
TCGA Data PortalC16orf46 
Broad Tumor PortalC16orf46
OASIS PortalC16orf46 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf46  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf46
DgiDB (Drug Gene Interaction Database)C16orf46
DoCM (Curated mutations)C16orf46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf46 (select a term)
intoGenC16orf46
Cancer3DC16orf46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf46
Genetic Testing Registry C16orf46
NextProtQ6P387 [Medical]
TSGene123775
GENETestsC16orf46
Huge Navigator C16orf46 [HugePedia]
snp3D : Map Gene to Disease123775
BioCentury BCIQC16orf46
ClinGenC16orf46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123775
Chemical/Pharm GKB GenePA142672254
Clinical trialC16orf46
Miscellaneous
canSAR (ICR)C16orf46 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf46
EVEXC16orf46
GoPubMedC16orf46
iHOPC16orf46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:02:38 CEST 2017

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