Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf47 (chromosome 16 open reading frame 47)

Identity

Alias_symbol (synonym)FLJ26184
Other alias-
HGNC (Hugo) C16orf47
LocusID (NCBI) 388289
Atlas_Id 60963
Location 16q22.3  [Link to chromosome band 16q22]
Location_base_pair Starts at 73126638 and ends at 73144447 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf47   28329
Cards
Entrez_Gene (NCBI)C16orf47  388289  chromosome 16 open reading frame 47
Aliases
GeneCards (Weizmann)C16orf47
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:73126638-73144447 [Contig_View]  C16orf47 [Vega]
TCGA cBioPortalC16orf47
AceView (NCBI)C16orf47
Genatlas (Paris)C16orf47
WikiGenes388289
SOURCE (Princeton)C16orf47
Genetics Home Reference (NIH)C16orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf47  -     chr16:73126638-73144447 -  16q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf47  -     16q22.3   [Description]    (hg19-Feb_2009)
EnsemblC16orf47 - 16q22.3 [CytoView hg19]  C16orf47 - 16q22.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf47 [Mapview hg19]  C16orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129695
RefSeq transcript (Entrez)NM_207385
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf47
Cluster EST : UnigeneHs.371893 [ NCBI ]
CGAP (NCI)Hs.371893
Gene ExpressionC16orf47 [ NCBI-GEO ]   C16orf47 [ EBI - ARRAY_EXPRESS ]   C16orf47 [ SEEK ]   C16orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388289
GTEX Portal (Tissue expression)C16orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP98   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP98  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP98
Splice isoforms : SwissVarQ6ZP98
PhosPhoSitePlusQ6ZP98
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf47
DMDM Disease mutations388289
Blocks (Seattle)C16orf47
SuperfamilyQ6ZP98
Peptide AtlasQ6ZP98
HPRD16623
IPIIPI00399207   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP98
IntAct (EBI)Q6ZP98
BioGRIDC16orf47
STRING (EMBL)C16orf47
ZODIACC16orf47
Ontologies - Pathways
QuickGOQ6ZP98
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf47
Atlas of Cancer Signalling NetworkC16orf47
Wikipedia pathwaysC16orf47
Orthology - Evolution
OrthoDB388289
Phylogenetic Trees/Animal Genes : TreeFamC16orf47
HOVERGENQ6ZP98
HOGENOMQ6ZP98
Homologs : HomoloGeneC16orf47
Homology/Alignments : Family Browser (UCSC)C16orf47
Gene fusions - Rearrangements
Fusion: Tumor Portal C16orf47
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf47
dbVarC16orf47
ClinVarC16orf47
1000_GenomesC16orf47 
Exome Variant ServerC16orf47
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP388289
Genomic Variants (DGV)C16orf47 [DGVbeta]
DECIPHERC16orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf47 
Mutations
ICGC Data PortalC16orf47 
TCGA Data PortalC16orf47 
Broad Tumor PortalC16orf47
OASIS PortalC16orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf47
DgiDB (Drug Gene Interaction Database)C16orf47
DoCM (Curated mutations)C16orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf47 (select a term)
intoGenC16orf47
Cancer3DC16orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf47
Genetic Testing Registry C16orf47
NextProtQ6ZP98 [Medical]
TSGene388289
GENETestsC16orf47
Target ValidationC16orf47
Huge Navigator C16orf47 [HugePedia]
snp3D : Map Gene to Disease388289
BioCentury BCIQC16orf47
ClinGenC16orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388289
Chemical/Pharm GKB GenePA142672255
Clinical trialC16orf47
Miscellaneous
canSAR (ICR)C16orf47 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf47
EVEXC16orf47
GoPubMedC16orf47
iHOPC16orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:47 CET 2017

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