Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf52 (chromosome 16 open reading frame 52)

Identity

Other alias-
HGNC (Hugo) C16orf52
LocusID (NCBI) 730094
Atlas_Id 60964
Location 16p12.2  [Link to chromosome band 16p12]
Location_base_pair Starts at 22008135 and ends at 22084651 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf52 (16p12.2) / CLU (8p21.1)C16orf52 (16p12.2) / DMD (Xp21.2)C16orf52 (16p12.2) / EEF2 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf52   27087
Cards
Entrez_Gene (NCBI)C16orf52  730094  chromosome 16 open reading frame 52
Aliases
GeneCards (Weizmann)C16orf52
Ensembl hg19 (Hinxton)ENSG00000185716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185716 [Gene_View]  chr16:22008135-22084651 [Contig_View]  C16orf52 [Vega]
ICGC DataPortalENSG00000185716
TCGA cBioPortalC16orf52
AceView (NCBI)C16orf52
Genatlas (Paris)C16orf52
WikiGenes730094
SOURCE (Princeton)C16orf52
Genetics Home Reference (NIH)C16orf52
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf52  -     chr16:22008135-22084651 +  16p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf52  -     16p12.2   [Description]    (hg19-Feb_2009)
EnsemblC16orf52 - 16p12.2 [CytoView hg19]  C16orf52 - 16p12.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf52 [Mapview hg19]  C16orf52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086142 AK095585 BC027604 BC045557 BC053950
RefSeq transcript (Entrez)NM_001164579 NM_173501
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf52
Cluster EST : UnigeneHs.498890 [ NCBI ]
CGAP (NCI)Hs.498890
Alternative Splicing GalleryENSG00000185716
Gene ExpressionC16orf52 [ NCBI-GEO ]   C16orf52 [ EBI - ARRAY_EXPRESS ]   C16orf52 [ SEEK ]   C16orf52 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730094
GTEX Portal (Tissue expression)C16orf52
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHV5
Splice isoforms : SwissVarQ8NHV5
PhosPhoSitePlusQ8NHV5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf52
DMDM Disease mutations730094
Blocks (Seattle)C16orf52
SuperfamilyQ8NHV5
Human Protein AtlasENSG00000185716
Peptide AtlasQ8NHV5
IPIIPI00816379   IPI00169347   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHV5
IntAct (EBI)Q8NHV5
FunCoupENSG00000185716
BioGRIDC16orf52
STRING (EMBL)C16orf52
ZODIACC16orf52
Ontologies - Pathways
QuickGOQ8NHV5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf52
Atlas of Cancer Signalling NetworkC16orf52
Wikipedia pathwaysC16orf52
Orthology - Evolution
OrthoDB730094
GeneTree (enSembl)ENSG00000185716
Phylogenetic Trees/Animal Genes : TreeFamC16orf52
HOVERGENQ8NHV5
HOGENOMQ8NHV5
Homologs : HomoloGeneC16orf52
Homology/Alignments : Family Browser (UCSC)C16orf52
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf52 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf52
dbVarC16orf52
ClinVarC16orf52
1000_GenomesC16orf52 
Exome Variant ServerC16orf52
ExAC (Exome Aggregation Consortium)C16orf52 (select the gene name)
Genetic variants : HAPMAP730094
Genomic Variants (DGV)C16orf52 [DGVbeta]
DECIPHERC16orf52 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf52 
Mutations
ICGC Data PortalC16orf52 
TCGA Data PortalC16orf52 
Broad Tumor PortalC16orf52
OASIS PortalC16orf52 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf52  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf52
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf52
DgiDB (Drug Gene Interaction Database)C16orf52
DoCM (Curated mutations)C16orf52 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf52 (select a term)
intoGenC16orf52
Cancer3DC16orf52(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf52
Genetic Testing Registry C16orf52
NextProtQ8NHV5 [Medical]
TSGene730094
GENETestsC16orf52
Target ValidationC16orf52
Huge Navigator C16orf52 [HugePedia]
snp3D : Map Gene to Disease730094
BioCentury BCIQC16orf52
ClinGenC16orf52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730094
Chemical/Pharm GKB GenePA142672259
Clinical trialC16orf52
Miscellaneous
canSAR (ICR)C16orf52 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf52
EVEXC16orf52
GoPubMedC16orf52
iHOPC16orf52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:49 CEST 2017

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