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C16orf54 (chromosome 16 open reading frame 54)

Identity

Alias_symbol (synonym)FLJ35681
Other alias-
HGNC (Hugo) C16orf54
LocusID (NCBI) 283897
Atlas_Id 60965
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29742465 and ends at 29746019 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf54   26649
Cards
Entrez_Gene (NCBI)C16orf54  283897  chromosome 16 open reading frame 54
Aliases
GeneCards (Weizmann)C16orf54
Ensembl hg19 (Hinxton)ENSG00000185905 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185905 [Gene_View]  chr16:29742465-29746019 [Contig_View]  C16orf54 [Vega]
ICGC DataPortalENSG00000185905
TCGA cBioPortalC16orf54
AceView (NCBI)C16orf54
Genatlas (Paris)C16orf54
WikiGenes283897
SOURCE (Princeton)C16orf54
Genetics Home Reference (NIH)C16orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf54  -     chr16:29742465-29746019 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf54  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblC16orf54 - 16p11.2 [CytoView hg19]  C16orf54 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf54 [Mapview hg19]  C16orf54 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093000 AY358833 BC025741 BC104466 BC104467
RefSeq transcript (Entrez)NM_175900
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf54
Cluster EST : UnigeneHs.331095 [ NCBI ]
CGAP (NCI)Hs.331095
Alternative Splicing GalleryENSG00000185905
Gene ExpressionC16orf54 [ NCBI-GEO ]   C16orf54 [ EBI - ARRAY_EXPRESS ]   C16orf54 [ SEEK ]   C16orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283897
GTEX Portal (Tissue expression)C16orf54
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWD8
Splice isoforms : SwissVarQ6UWD8
PhosPhoSitePlusQ6UWD8
Domains : Interpro (EBI)DUF4689   
Domain families : Pfam (Sanger)DUF4689 (PF15755)   
Domain families : Pfam (NCBI)pfam15755   
Conserved Domain (NCBI)C16orf54
DMDM Disease mutations283897
Blocks (Seattle)C16orf54
SuperfamilyQ6UWD8
Human Protein AtlasENSG00000185905
Peptide AtlasQ6UWD8
HPRD08183
IPIIPI00167951   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWD8
IntAct (EBI)Q6UWD8
FunCoupENSG00000185905
BioGRIDC16orf54
STRING (EMBL)C16orf54
ZODIACC16orf54
Ontologies - Pathways
QuickGOQ6UWD8
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC16orf54
Atlas of Cancer Signalling NetworkC16orf54
Wikipedia pathwaysC16orf54
Orthology - Evolution
OrthoDB283897
GeneTree (enSembl)ENSG00000185905
Phylogenetic Trees/Animal Genes : TreeFamC16orf54
HOVERGENQ6UWD8
HOGENOMQ6UWD8
Homologs : HomoloGeneC16orf54
Homology/Alignments : Family Browser (UCSC)C16orf54
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf54 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf54
dbVarC16orf54
ClinVarC16orf54
1000_GenomesC16orf54 
Exome Variant ServerC16orf54
ExAC (Exome Aggregation Consortium)C16orf54 (select the gene name)
Genetic variants : HAPMAP283897
Genomic Variants (DGV)C16orf54 [DGVbeta]
DECIPHERC16orf54 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf54 
Mutations
ICGC Data PortalC16orf54 
TCGA Data PortalC16orf54 
Broad Tumor PortalC16orf54
OASIS PortalC16orf54 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf54  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf54
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf54
DgiDB (Drug Gene Interaction Database)C16orf54
DoCM (Curated mutations)C16orf54 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf54 (select a term)
intoGenC16orf54
Cancer3DC16orf54(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf54
Genetic Testing Registry C16orf54
NextProtQ6UWD8 [Medical]
TSGene283897
GENETestsC16orf54
Target ValidationC16orf54
Huge Navigator C16orf54 [HugePedia]
snp3D : Map Gene to Disease283897
BioCentury BCIQC16orf54
ClinGenC16orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283897
Chemical/Pharm GKB GenePA142672261
Clinical trialC16orf54
Miscellaneous
canSAR (ICR)C16orf54 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf54
EVEXC16orf54
GoPubMedC16orf54
iHOPC16orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:28 CEST 2017

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