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C16orf58 (chromosome 16 open reading frame 58)

Identity

Alias_symbol (synonym)FLJ13868
Other aliasRUS
HGNC (Hugo) C16orf58
LocusID (NCBI) 64755
Atlas_Id 60966
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31489475 and ends at 31508419 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf58 (16p11.2) / FBL (19q13.2)C16orf58 (16p11.2) / MYO1D (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf58   25848
Cards
Entrez_Gene (NCBI)C16orf58  64755  chromosome 16 open reading frame 58
AliasesRUS
GeneCards (Weizmann)C16orf58
Ensembl hg19 (Hinxton)ENSG00000140688 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140688 [Gene_View]  chr16:31489475-31508419 [Contig_View]  C16orf58 [Vega]
ICGC DataPortalENSG00000140688
TCGA cBioPortalC16orf58
AceView (NCBI)C16orf58
Genatlas (Paris)C16orf58
WikiGenes64755
SOURCE (Princeton)C16orf58
Genetics Home Reference (NIH)C16orf58
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf58  -     chr16:31489475-31508419 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf58  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblC16orf58 - 16p11.2 [CytoView hg19]  C16orf58 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf58 [Mapview hg19]  C16orf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000679 AK023930 AK092580 AK222913 AK296166
RefSeq transcript (Entrez)NM_022744
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf58
Cluster EST : UnigeneHs.499102 [ NCBI ]
CGAP (NCI)Hs.499102
Alternative Splicing GalleryENSG00000140688
Gene ExpressionC16orf58 [ NCBI-GEO ]   C16orf58 [ EBI - ARRAY_EXPRESS ]   C16orf58 [ SEEK ]   C16orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64755
GTEX Portal (Tissue expression)C16orf58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GQ5
Splice isoforms : SwissVarQ96GQ5
PhosPhoSitePlusQ96GQ5
Domains : Interpro (EBI)RUS_fam   
Domain families : Pfam (Sanger)DUF647 (PF04884)   
Domain families : Pfam (NCBI)pfam04884   
Conserved Domain (NCBI)C16orf58
DMDM Disease mutations64755
Blocks (Seattle)C16orf58
SuperfamilyQ96GQ5
Human Protein AtlasENSG00000140688
Peptide AtlasQ96GQ5
HPRD07839
IPIIPI00305627   IPI00385776   IPI00908670   IPI01011420   IPI00909885   
Protein Interaction databases
DIP (DOE-UCLA)Q96GQ5
IntAct (EBI)Q96GQ5
FunCoupENSG00000140688
BioGRIDC16orf58
STRING (EMBL)C16orf58
ZODIACC16orf58
Ontologies - Pathways
QuickGOQ96GQ5
Ontology : AmiGOmembrane  integral component of membrane  
Ontology : EGO-EBImembrane  integral component of membrane  
NDEx NetworkC16orf58
Atlas of Cancer Signalling NetworkC16orf58
Wikipedia pathwaysC16orf58
Orthology - Evolution
OrthoDB64755
GeneTree (enSembl)ENSG00000140688
Phylogenetic Trees/Animal Genes : TreeFamC16orf58
HOVERGENQ96GQ5
HOGENOMQ96GQ5
Homologs : HomoloGeneC16orf58
Homology/Alignments : Family Browser (UCSC)C16orf58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf58
dbVarC16orf58
ClinVarC16orf58
1000_GenomesC16orf58 
Exome Variant ServerC16orf58
ExAC (Exome Aggregation Consortium)C16orf58 (select the gene name)
Genetic variants : HAPMAP64755
Genomic Variants (DGV)C16orf58 [DGVbeta]
DECIPHERC16orf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf58 
Mutations
ICGC Data PortalC16orf58 
TCGA Data PortalC16orf58 
Broad Tumor PortalC16orf58
OASIS PortalC16orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf58
DgiDB (Drug Gene Interaction Database)C16orf58
DoCM (Curated mutations)C16orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf58 (select a term)
intoGenC16orf58
Cancer3DC16orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf58
Genetic Testing Registry C16orf58
NextProtQ96GQ5 [Medical]
TSGene64755
GENETestsC16orf58
Target ValidationC16orf58
Huge Navigator C16orf58 [HugePedia]
snp3D : Map Gene to Disease64755
BioCentury BCIQC16orf58
ClinGenC16orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64755
Chemical/Pharm GKB GenePA143485395
Clinical trialC16orf58
Miscellaneous
canSAR (ICR)C16orf58 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf58
EVEXC16orf58
GoPubMedC16orf58
iHOPC16orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:50 CEST 2017

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