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C16orf59 (chromosome 16 open reading frame 59)

Identity

Alias_symbol (synonym)FLJ13909
Other alias-
HGNC (Hugo) C16orf59
LocusID (NCBI) 80178
Atlas_Id 60967
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2460114 and ends at 2464963 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf59   25849
Cards
Entrez_Gene (NCBI)C16orf59  80178  chromosome 16 open reading frame 59
Aliases
GeneCards (Weizmann)C16orf59
Ensembl hg19 (Hinxton)ENSG00000162062 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162062 [Gene_View]  chr16:2460114-2464963 [Contig_View]  C16orf59 [Vega]
ICGC DataPortalENSG00000162062
TCGA cBioPortalC16orf59
AceView (NCBI)C16orf59
Genatlas (Paris)C16orf59
WikiGenes80178
SOURCE (Princeton)C16orf59
Genetics Home Reference (NIH)C16orf59
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf59  -     chr16:2460114-2464963 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf59  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblC16orf59 - 16p13.3 [CytoView hg19]  C16orf59 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf59 [Mapview hg19]  C16orf59 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023971 AK093788 AK128408 AK301929 AL559561
RefSeq transcript (Entrez)NM_025108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf59
Cluster EST : UnigeneHs.534491 [ NCBI ]
CGAP (NCI)Hs.534491
Alternative Splicing GalleryENSG00000162062
Gene ExpressionC16orf59 [ NCBI-GEO ]   C16orf59 [ EBI - ARRAY_EXPRESS ]   C16orf59 [ SEEK ]   C16orf59 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf59 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80178
GTEX Portal (Tissue expression)C16orf59
Human Protein AtlasENSG00000162062-C16orf59 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L2K0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L2K0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L2K0
Splice isoforms : SwissVarQ7L2K0
PhosPhoSitePlusQ7L2K0
Domains : Interpro (EBI)DUF4693   
Domain families : Pfam (Sanger)DUF4693 (PF15764)   
Domain families : Pfam (NCBI)pfam15764   
Conserved Domain (NCBI)C16orf59
DMDM Disease mutations80178
Blocks (Seattle)C16orf59
SuperfamilyQ7L2K0
Human Protein Atlas [tissue]ENSG00000162062-C16orf59 [tissue]
Peptide AtlasQ7L2K0
HPRD07840
IPIIPI00646232   IPI00018122   IPI00386738   IPI00639991   
Protein Interaction databases
DIP (DOE-UCLA)Q7L2K0
IntAct (EBI)Q7L2K0
FunCoupENSG00000162062
BioGRIDC16orf59
STRING (EMBL)C16orf59
ZODIACC16orf59
Ontologies - Pathways
QuickGOQ7L2K0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC16orf59
Atlas of Cancer Signalling NetworkC16orf59
Wikipedia pathwaysC16orf59
Orthology - Evolution
OrthoDB80178
GeneTree (enSembl)ENSG00000162062
Phylogenetic Trees/Animal Genes : TreeFamC16orf59
HOVERGENQ7L2K0
HOGENOMQ7L2K0
Homologs : HomoloGeneC16orf59
Homology/Alignments : Family Browser (UCSC)C16orf59
Gene fusions - Rearrangements
Fusion: Tumor Portal C16orf59
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf59
dbVarC16orf59
ClinVarC16orf59
1000_GenomesC16orf59 
Exome Variant ServerC16orf59
ExAC (Exome Aggregation Consortium)ENSG00000162062
GNOMAD BrowserENSG00000162062
Genetic variants : HAPMAP80178
Genomic Variants (DGV)C16orf59 [DGVbeta]
DECIPHERC16orf59 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf59 
Mutations
ICGC Data PortalC16orf59 
TCGA Data PortalC16orf59 
Broad Tumor PortalC16orf59
OASIS PortalC16orf59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf59  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf59
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf59
DgiDB (Drug Gene Interaction Database)C16orf59
DoCM (Curated mutations)C16orf59 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf59 (select a term)
intoGenC16orf59
Cancer3DC16orf59(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf59
Genetic Testing Registry C16orf59
NextProtQ7L2K0 [Medical]
TSGene80178
GENETestsC16orf59
Target ValidationC16orf59
Huge Navigator C16orf59 [HugePedia]
snp3D : Map Gene to Disease80178
BioCentury BCIQC16orf59
ClinGenC16orf59
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80178
Chemical/Pharm GKB GenePA143485396
Clinical trialC16orf59
Miscellaneous
canSAR (ICR)C16orf59 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf59
EVEXC16orf59
GoPubMedC16orf59
iHOPC16orf59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:48 CET 2017

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