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C16orf62 (chromosome 16 open reading frame 62)

Identity

Alias_symbol (synonym)MGC16824
Other alias-
HGNC (Hugo) C16orf62
LocusID (NCBI) 57020
Atlas_Id 41351
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19566737 and ends at 19712485 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABAT (16p13.2) / C16orf62 (16p12.3)C16orf62 (16p12.3) / ABCC6P1 (16p12.3)C16orf62 (16p12.3) / EPM2A (6q24.3)
C16orf62 (16p12.3) / IQCK (16p12.3)C16orf62 (16p12.3) / TMC5 (16p12.3)FAM192A (16q13) / C16orf62 (16p12.3)
FGF1 (5q31.3) / C16orf62 (16p12.3)KNOP1 (16p12.3) / C16orf62 (16p12.3)ZNF598 (16p13.3) / C16orf62 (16p12.3)
ABAT 16p13.2 / C16orf62 16p12.3C16orf62 16p12.3 / ABCC6P1 16p12.3C16orf62 16p12.3 / TMC5 16p12.3
FAM192A 16q13 / C16orf62 16p12.3ZNF598 16p13.3 / C16orf62 16p12.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf62   24641
Cards
Entrez_Gene (NCBI)C16orf62  57020  chromosome 16 open reading frame 62
Aliases
GeneCards (Weizmann)C16orf62
Ensembl hg19 (Hinxton)ENSG00000103544 [Gene_View]  chr16:19566737-19712485 [Contig_View]  C16orf62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000103544 [Gene_View]  chr16:19566737-19712485 [Contig_View]  C16orf62 [Vega]
ICGC DataPortalENSG00000103544
TCGA cBioPortalC16orf62
AceView (NCBI)C16orf62
Genatlas (Paris)C16orf62
WikiGenes57020
SOURCE (Princeton)C16orf62
Genetics Home Reference (NIH)C16orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C16orf62  -     chr16:19566737-19712485 +  16p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C16orf62  -     16p12.3   [Description]    (hg38-Dec_2013)
EnsemblC16orf62 - 16p12.3 [CytoView hg19]  C16orf62 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf62 [Mapview hg19]  C16orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF461052 AK024693 AK095078 AK290286 AK294885
RefSeq transcript (Entrez)NM_001300743 NM_020314
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)C16orf62
Cluster EST : UnigeneHs.654964 [ NCBI ]
CGAP (NCI)Hs.654964
Alternative Splicing GalleryENSG00000103544
Gene ExpressionC16orf62 [ NCBI-GEO ]   C16orf62 [ EBI - ARRAY_EXPRESS ]   C16orf62 [ SEEK ]   C16orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57020
GTEX Portal (Tissue expression)C16orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3J2
Splice isoforms : SwissVarQ7Z3J2
PhosPhoSitePlusQ7Z3J2
Domains : Interpro (EBI)UPF0505   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf62
DMDM Disease mutations57020
Blocks (Seattle)C16orf62
SuperfamilyQ7Z3J2
Human Protein AtlasENSG00000103544
Peptide AtlasQ7Z3J2
HPRD14455
IPIIPI01018160   IPI01018078   IPI00909793   IPI00872797   IPI01011009   IPI01009880   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3J2
IntAct (EBI)Q7Z3J2
FunCoupENSG00000103544
BioGRIDC16orf62
STRING (EMBL)C16orf62
ZODIACC16orf62
Ontologies - Pathways
QuickGOQ7Z3J2
Ontology : AmiGOprotein binding  early endosome  Golgi to plasma membrane transport  protein transport  integral component of membrane  
Ontology : EGO-EBIprotein binding  early endosome  Golgi to plasma membrane transport  protein transport  integral component of membrane  
NDEx NetworkC16orf62
Atlas of Cancer Signalling NetworkC16orf62
Wikipedia pathwaysC16orf62
Orthology - Evolution
OrthoDB57020
GeneTree (enSembl)ENSG00000103544
Phylogenetic Trees/Animal Genes : TreeFamC16orf62
HOVERGENQ7Z3J2
HOGENOMQ7Z3J2
Homologs : HomoloGeneC16orf62
Homology/Alignments : Family Browser (UCSC)C16orf62
Gene fusions - Rearrangements
Fusion : MitelmanABAT/C16orf62 [16p13.2/16p12.3]  [t(16;16)(p12;p13)]  
Fusion : MitelmanC16orf62/ABCC6P1 [16p12.3/16p12.3]  [t(16;16)(p12;p12)]  
Fusion : MitelmanC16orf62/IQCK [16p12.3/16p12.3]  [t(16;16)(p12;p12)]  
Fusion : MitelmanC16orf62/TMC5 [16p12.3/16p12.3]  [t(16;16)(p12;p12)]  
Fusion : MitelmanFAM192A/C16orf62 [16q13/16p12.3]  [t(16;16)(p12;q13)]  
Fusion : MitelmanZNF598/C16orf62 [16p13.3/16p12.3]  [t(16;16)(p12;p13)]  
Fusion: TCGAABAT 16p13.2 C16orf62 16p12.3 BRCA
Fusion: TCGAC16orf62 16p12.3 ABCC6P1 16p12.3 BRCA
Fusion: TCGAC16orf62 16p12.3 TMC5 16p12.3 BRCA
Fusion: TCGAFAM192A 16q13 C16orf62 16p12.3 BRCA
Fusion: TCGAZNF598 16p13.3 C16orf62 16p12.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf62
dbVarC16orf62
ClinVarC16orf62
1000_GenomesC16orf62 
Exome Variant ServerC16orf62
ExAC (Exome Aggregation Consortium)C16orf62 (select the gene name)
Genetic variants : HAPMAP57020
Genomic Variants (DGV)C16orf62 [DGVbeta]
DECIPHER (Syndromes)16:19566737-19712485  ENSG00000103544
CONAN: Copy Number AnalysisC16orf62 
Mutations
ICGC Data PortalC16orf62 
TCGA Data PortalC16orf62 
Broad Tumor PortalC16orf62
OASIS PortalC16orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf62
DgiDB (Drug Gene Interaction Database)C16orf62
DoCM (Curated mutations)C16orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf62 (select a term)
intoGenC16orf62
Cancer3DC16orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf62
Genetic Testing Registry C16orf62
NextProtQ7Z3J2 [Medical]
TSGene57020
GENETestsC16orf62
Huge Navigator C16orf62 [HugePedia]
snp3D : Map Gene to Disease57020
BioCentury BCIQC16orf62
ClinGenC16orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57020
Chemical/Pharm GKB GenePA162378300
Clinical trialC16orf62
Miscellaneous
canSAR (ICR)C16orf62 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf62
EVEXC16orf62
GoPubMedC16orf62
iHOPC16orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:54:26 CEST 2017

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