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C16orf71 (chromosome 16 open reading frame 71)

Identity

Alias_symbol (synonym)FLJ43261
DKFZp686H2240
Other alias-
HGNC (Hugo) C16orf71
LocusID (NCBI) 146562
Atlas_Id 60969
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4784289 and ends at 4799397 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf71   25081
Cards
Entrez_Gene (NCBI)C16orf71  146562  chromosome 16 open reading frame 71
Aliases
GeneCards (Weizmann)C16orf71
Ensembl hg19 (Hinxton)ENSG00000166246 [Gene_View]  chr16:4784289-4799397 [Contig_View]  C16orf71 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166246 [Gene_View]  chr16:4784289-4799397 [Contig_View]  C16orf71 [Vega]
ICGC DataPortalENSG00000166246
TCGA cBioPortalC16orf71
AceView (NCBI)C16orf71
Genatlas (Paris)C16orf71
WikiGenes146562
SOURCE (Princeton)C16orf71
Genetics Home Reference (NIH)C16orf71
Genomic and cartography
GoldenPath hg19 (UCSC)C16orf71  -     chr16:4784289-4799397 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C16orf71  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblC16orf71 - 16p13.3 [CytoView hg19]  C16orf71 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf71 [Mapview hg19]  C16orf71 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF447587 AK125251 AK301794 BC035024 BI458862
RefSeq transcript (Entrez)NM_139170
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)C16orf71
Cluster EST : UnigeneHs.602738 [ NCBI ]
CGAP (NCI)Hs.602738
Alternative Splicing GalleryENSG00000166246
Gene ExpressionC16orf71 [ NCBI-GEO ]   C16orf71 [ EBI - ARRAY_EXPRESS ]   C16orf71 [ SEEK ]   C16orf71 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf71 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146562
GTEX Portal (Tissue expression)C16orf71
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYS4
Splice isoforms : SwissVarQ8IYS4
PhosPhoSitePlusQ8IYS4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf71
DMDM Disease mutations146562
Blocks (Seattle)C16orf71
SuperfamilyQ8IYS4
Human Protein AtlasENSG00000166246
Peptide AtlasQ8IYS4
HPRD11238
IPIIPI00293592   IPI00646636   IPI01010187   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYS4
IntAct (EBI)Q8IYS4
FunCoupENSG00000166246
BioGRIDC16orf71
STRING (EMBL)C16orf71
ZODIACC16orf71
Ontologies - Pathways
QuickGOQ8IYS4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf71
Atlas of Cancer Signalling NetworkC16orf71
Wikipedia pathwaysC16orf71
Orthology - Evolution
OrthoDB146562
GeneTree (enSembl)ENSG00000166246
Phylogenetic Trees/Animal Genes : TreeFamC16orf71
HOVERGENQ8IYS4
HOGENOMQ8IYS4
Homologs : HomoloGeneC16orf71
Homology/Alignments : Family Browser (UCSC)C16orf71
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf71 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf71
dbVarC16orf71
ClinVarC16orf71
1000_GenomesC16orf71 
Exome Variant ServerC16orf71
ExAC (Exome Aggregation Consortium)C16orf71 (select the gene name)
Genetic variants : HAPMAP146562
Genomic Variants (DGV)C16orf71 [DGVbeta]
DECIPHER (Syndromes)16:4784289-4799397  ENSG00000166246
CONAN: Copy Number AnalysisC16orf71 
Mutations
ICGC Data PortalC16orf71 
TCGA Data PortalC16orf71 
Broad Tumor PortalC16orf71
OASIS PortalC16orf71 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf71  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf71
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf71
DgiDB (Drug Gene Interaction Database)C16orf71
DoCM (Curated mutations)C16orf71 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf71 (select a term)
intoGenC16orf71
Cancer3DC16orf71(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf71
Genetic Testing Registry C16orf71
NextProtQ8IYS4 [Medical]
TSGene146562
GENETestsC16orf71
Huge Navigator C16orf71 [HugePedia]
snp3D : Map Gene to Disease146562
BioCentury BCIQC16orf71
ClinGenC16orf71
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146562
Chemical/Pharm GKB GenePA145149565
Clinical trialC16orf71
Miscellaneous
canSAR (ICR)C16orf71 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf71
EVEXC16orf71
GoPubMedC16orf71
iHOPC16orf71
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:37 CET 2017

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