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C16orf72 (chromosome 16 open reading frame 72)

Identity

Alias_symbol (synonym)FLJ41272
PRO0149
Other alias
HGNC (Hugo) C16orf72
LocusID (NCBI) 29035
Atlas_Id 60970
Location 16p13.2  [Link to chromosome band 16p13]
Location_base_pair Starts at 9091680 and ends at 9119698 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf72 (16p13.2) / C16orf72 (16p13.2)C16orf72 (16p13.2) / HSPA8 (11q24.1)C16orf72 (16p13.2) / PAK1 (11q13.5)
CHAC1 (15q15.1) / C16orf72 (16p13.2)CPT1A (11q13.3) / C16orf72 (16p13.2)SPIN1 (9q22.1) / C16orf72 (16p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf72   30103
Cards
Entrez_Gene (NCBI)C16orf72  29035  chromosome 16 open reading frame 72
AliasesPRO0149
GeneCards (Weizmann)C16orf72
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:9091680-9119698 [Contig_View]  C16orf72 [Vega]
TCGA cBioPortalC16orf72
AceView (NCBI)C16orf72
Genatlas (Paris)C16orf72
WikiGenes29035
SOURCE (Princeton)C16orf72
Genetics Home Reference (NIH)C16orf72
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf72  -     chr16:9091680-9119698 +  16p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf72  -     16p13.2   [Description]    (hg19-Feb_2009)
EnsemblC16orf72 - 16p13.2 [CytoView hg19]  C16orf72 - 16p13.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf72 [Mapview hg19]  C16orf72 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057657 AK094351 AK095835 AK123266 AK123562
RefSeq transcript (Entrez)NM_014117
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf72
Cluster EST : UnigeneHs.728924 [ NCBI ]
CGAP (NCI)Hs.728924
Gene ExpressionC16orf72 [ NCBI-GEO ]   C16orf72 [ EBI - ARRAY_EXPRESS ]   C16orf72 [ SEEK ]   C16orf72 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf72 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29035
GTEX Portal (Tissue expression)C16orf72
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14CZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14CZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14CZ0
Splice isoforms : SwissVarQ14CZ0
PhosPhoSitePlusQ14CZ0
Domains : Interpro (EBI)DUF4588   
Domain families : Pfam (Sanger)DUF4588 (PF15251)   
Domain families : Pfam (NCBI)pfam15251   
Conserved Domain (NCBI)C16orf72
DMDM Disease mutations29035
Blocks (Seattle)C16orf72
SuperfamilyQ14CZ0
Peptide AtlasQ14CZ0
HPRD17910
IPIIPI00374163   IPI00022958   
Protein Interaction databases
DIP (DOE-UCLA)Q14CZ0
IntAct (EBI)Q14CZ0
BioGRIDC16orf72
STRING (EMBL)C16orf72
ZODIACC16orf72
Ontologies - Pathways
QuickGOQ14CZ0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC16orf72
Atlas of Cancer Signalling NetworkC16orf72
Wikipedia pathwaysC16orf72
Orthology - Evolution
OrthoDB29035
Phylogenetic Trees/Animal Genes : TreeFamC16orf72
HOVERGENQ14CZ0
HOGENOMQ14CZ0
Homologs : HomoloGeneC16orf72
Homology/Alignments : Family Browser (UCSC)C16orf72
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf72 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf72
dbVarC16orf72
ClinVarC16orf72
1000_GenomesC16orf72 
Exome Variant ServerC16orf72
ExAC (Exome Aggregation Consortium)C16orf72 (select the gene name)
Genetic variants : HAPMAP29035
Genomic Variants (DGV)C16orf72 [DGVbeta]
DECIPHERC16orf72 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf72 
Mutations
ICGC Data PortalC16orf72 
TCGA Data PortalC16orf72 
Broad Tumor PortalC16orf72
OASIS PortalC16orf72 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf72  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf72
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf72
DgiDB (Drug Gene Interaction Database)C16orf72
DoCM (Curated mutations)C16orf72 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf72 (select a term)
intoGenC16orf72
Cancer3DC16orf72(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf72
Genetic Testing Registry C16orf72
NextProtQ14CZ0 [Medical]
TSGene29035
GENETestsC16orf72
Target ValidationC16orf72
Huge Navigator C16orf72 [HugePedia]
snp3D : Map Gene to Disease29035
BioCentury BCIQC16orf72
ClinGenC16orf72
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29035
Chemical/Pharm GKB GenePA145149589
Clinical trialC16orf72
Miscellaneous
canSAR (ICR)C16orf72 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf72
EVEXC16orf72
GoPubMedC16orf72
iHOPC16orf72
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:50 CEST 2017

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