Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf78 (chromosome 16 open reading frame 78)

Identity

Alias_symbol (synonym)MGC33367
Other alias-
HGNC (Hugo) C16orf78
LocusID (NCBI) 123970
Atlas_Id 60971
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 49373808 and ends at 49399431 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf78   28479
Cards
Entrez_Gene (NCBI)C16orf78  123970  chromosome 16 open reading frame 78
Aliases
GeneCards (Weizmann)C16orf78
Ensembl hg19 (Hinxton)ENSG00000166152 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166152 [Gene_View]  chr16:49373808-49399431 [Contig_View]  C16orf78 [Vega]
ICGC DataPortalENSG00000166152
TCGA cBioPortalC16orf78
AceView (NCBI)C16orf78
Genatlas (Paris)C16orf78
WikiGenes123970
SOURCE (Princeton)C16orf78
Genetics Home Reference (NIH)C16orf78
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf78  -     chr16:49373808-49399431 +  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf78  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblC16orf78 - 16q12.1 [CytoView hg19]  C16orf78 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIC16orf78 [Mapview hg19]  C16orf78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI478870 BC021181 BC021718 HQ447400 HY001804
RefSeq transcript (Entrez)NM_144602
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf78
Cluster EST : UnigeneHs.125875 [ NCBI ]
CGAP (NCI)Hs.125875
Alternative Splicing GalleryENSG00000166152
Gene ExpressionC16orf78 [ NCBI-GEO ]   C16orf78 [ EBI - ARRAY_EXPRESS ]   C16orf78 [ SEEK ]   C16orf78 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)123970
GTEX Portal (Tissue expression)C16orf78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTQ4
Splice isoforms : SwissVarQ8WTQ4
PhosPhoSitePlusQ8WTQ4
Domains : Interpro (EBI)DUF4638   
Domain families : Pfam (Sanger)DUF4638 (PF15472)   
Domain families : Pfam (NCBI)pfam15472   
Conserved Domain (NCBI)C16orf78
DMDM Disease mutations123970
Blocks (Seattle)C16orf78
SuperfamilyQ8WTQ4
Human Protein AtlasENSG00000166152
Peptide AtlasQ8WTQ4
HPRD14560
IPIIPI00102800   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTQ4
IntAct (EBI)Q8WTQ4
FunCoupENSG00000166152
BioGRIDC16orf78
STRING (EMBL)C16orf78
ZODIACC16orf78
Ontologies - Pathways
QuickGOQ8WTQ4
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkC16orf78
Atlas of Cancer Signalling NetworkC16orf78
Wikipedia pathwaysC16orf78
Orthology - Evolution
OrthoDB123970
GeneTree (enSembl)ENSG00000166152
Phylogenetic Trees/Animal Genes : TreeFamC16orf78
HOVERGENQ8WTQ4
HOGENOMQ8WTQ4
Homologs : HomoloGeneC16orf78
Homology/Alignments : Family Browser (UCSC)C16orf78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf78
dbVarC16orf78
ClinVarC16orf78
1000_GenomesC16orf78 
Exome Variant ServerC16orf78
ExAC (Exome Aggregation Consortium)C16orf78 (select the gene name)
Genetic variants : HAPMAP123970
Genomic Variants (DGV)C16orf78 [DGVbeta]
DECIPHERC16orf78 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf78 
Mutations
ICGC Data PortalC16orf78 
TCGA Data PortalC16orf78 
Broad Tumor PortalC16orf78
OASIS PortalC16orf78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf78
DgiDB (Drug Gene Interaction Database)C16orf78
DoCM (Curated mutations)C16orf78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf78 (select a term)
intoGenC16orf78
Cancer3DC16orf78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf78
Genetic Testing Registry C16orf78
NextProtQ8WTQ4 [Medical]
TSGene123970
GENETestsC16orf78
Target ValidationC16orf78
Huge Navigator C16orf78 [HugePedia]
snp3D : Map Gene to Disease123970
BioCentury BCIQC16orf78
ClinGenC16orf78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD123970
Chemical/Pharm GKB GenePA147358456
Clinical trialC16orf78
Miscellaneous
canSAR (ICR)C16orf78 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf78
EVEXC16orf78
GoPubMedC16orf78
iHOPC16orf78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:50 CEST 2017

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