Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf82 (chromosome 16 open reading frame 82)

Identity

Alias_symbol (synonym)TNT
Other alias
HGNC (Hugo) C16orf82
LocusID (NCBI) 162083
Atlas_Id 60972
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 27066898 and ends at 27069166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf82 (16p12.1) / DEF6 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf82   30755
Cards
Entrez_Gene (NCBI)C16orf82  162083  chromosome 16 open reading frame 82
AliasesTNT
GeneCards (Weizmann)C16orf82
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:27066898-27069166 [Contig_View]  C16orf82 [Vega]
TCGA cBioPortalC16orf82
AceView (NCBI)C16orf82
Genatlas (Paris)C16orf82
WikiGenes162083
SOURCE (Princeton)C16orf82
Genetics Home Reference (NIH)C16orf82
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf82  -     chr16:27066898-27069166 +  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf82  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblC16orf82 - 16p12.1 [CytoView hg19]  C16orf82 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIC16orf82 [Mapview hg19]  C16orf82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF536240 AI025812 AK311574 AW450252 BC031257
RefSeq transcript (Entrez)NM_001145545 NM_182831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf82
Cluster EST : UnigeneHs.120831 [ NCBI ]
CGAP (NCI)Hs.120831
Gene ExpressionC16orf82 [ NCBI-GEO ]   C16orf82 [ EBI - ARRAY_EXPRESS ]   C16orf82 [ SEEK ]   C16orf82 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162083
GTEX Portal (Tissue expression)C16orf82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z2V1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z2V1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z2V1
Splice isoforms : SwissVarQ7Z2V1
PhosPhoSitePlusQ7Z2V1
Domains : Interpro (EBI)DUF4694   
Domain families : Pfam (Sanger)DUF4694 (PF15765)   
Domain families : Pfam (NCBI)pfam15765   
Conserved Domain (NCBI)C16orf82
DMDM Disease mutations162083
Blocks (Seattle)C16orf82
SuperfamilyQ7Z2V1
Peptide AtlasQ7Z2V1
HPRD18211
IPIIPI00337352   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z2V1
IntAct (EBI)Q7Z2V1
BioGRIDC16orf82
STRING (EMBL)C16orf82
ZODIACC16orf82
Ontologies - Pathways
QuickGOQ7Z2V1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf82
Atlas of Cancer Signalling NetworkC16orf82
Wikipedia pathwaysC16orf82
Orthology - Evolution
OrthoDB162083
Phylogenetic Trees/Animal Genes : TreeFamC16orf82
HOVERGENQ7Z2V1
HOGENOMQ7Z2V1
Homologs : HomoloGeneC16orf82
Homology/Alignments : Family Browser (UCSC)C16orf82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf82
dbVarC16orf82
ClinVarC16orf82
1000_GenomesC16orf82 
Exome Variant ServerC16orf82
ExAC (Exome Aggregation Consortium)C16orf82 (select the gene name)
Genetic variants : HAPMAP162083
Genomic Variants (DGV)C16orf82 [DGVbeta]
DECIPHERC16orf82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf82 
Mutations
ICGC Data PortalC16orf82 
TCGA Data PortalC16orf82 
Broad Tumor PortalC16orf82
OASIS PortalC16orf82 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC16orf82
BioMutasearch C16orf82
DgiDB (Drug Gene Interaction Database)C16orf82
DoCM (Curated mutations)C16orf82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf82 (select a term)
intoGenC16orf82
Cancer3DC16orf82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf82
Genetic Testing Registry C16orf82
NextProtQ7Z2V1 [Medical]
TSGene162083
GENETestsC16orf82
Target ValidationC16orf82
Huge Navigator C16orf82 [HugePedia]
snp3D : Map Gene to Disease162083
BioCentury BCIQC16orf82
ClinGenC16orf82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162083
Chemical/Pharm GKB GenePA164716846
Clinical trialC16orf82
Miscellaneous
canSAR (ICR)C16orf82 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf82
EVEXC16orf82
GoPubMedC16orf82
iHOPC16orf82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:40:29 CEST 2017

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