Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf86 (chromosome 16 open reading frame 86)

Identity

Alias_symbol (synonym)FLJ41802
Other alias-
HGNC (Hugo) C16orf86
LocusID (NCBI) 388284
Atlas_Id 60973
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 67666814 and ends at 67668758 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf86   33755
Cards
Entrez_Gene (NCBI)C16orf86  388284  chromosome 16 open reading frame 86
Aliases
GeneCards (Weizmann)C16orf86
Ensembl hg19 (Hinxton)ENSG00000159761 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159761 [Gene_View]  chr16:67666814-67668758 [Contig_View]  C16orf86 [Vega]
ICGC DataPortalENSG00000159761
TCGA cBioPortalC16orf86
AceView (NCBI)C16orf86
Genatlas (Paris)C16orf86
WikiGenes388284
SOURCE (Princeton)C16orf86
Genetics Home Reference (NIH)C16orf86
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf86  -     chr16:67666814-67668758 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf86  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblC16orf86 - 16q22.1 [CytoView hg19]  C16orf86 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIC16orf86 [Mapview hg19]  C16orf86 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123796 BC032064 BC041612 BC064498 BC082249
RefSeq transcript (Entrez)NM_001012984
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf86
Cluster EST : UnigeneHs.632208 [ NCBI ]
CGAP (NCI)Hs.632208
Alternative Splicing GalleryENSG00000159761
Gene ExpressionC16orf86 [ NCBI-GEO ]   C16orf86 [ EBI - ARRAY_EXPRESS ]   C16orf86 [ SEEK ]   C16orf86 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf86 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388284
GTEX Portal (Tissue expression)C16orf86
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZW13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZW13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZW13
Splice isoforms : SwissVarQ6ZW13
PhosPhoSitePlusQ6ZW13
Domains : Interpro (EBI)DUF4691   
Domain families : Pfam (Sanger)DUF4691 (PF15762)   
Domain families : Pfam (NCBI)pfam15762   
Conserved Domain (NCBI)C16orf86
DMDM Disease mutations388284
Blocks (Seattle)C16orf86
SuperfamilyQ6ZW13
Human Protein AtlasENSG00000159761
Peptide AtlasQ6ZW13
HPRD18380
IPIIPI00419145   IPI00877603   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZW13
IntAct (EBI)Q6ZW13
FunCoupENSG00000159761
BioGRIDC16orf86
STRING (EMBL)C16orf86
ZODIACC16orf86
Ontologies - Pathways
QuickGOQ6ZW13
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf86
Atlas of Cancer Signalling NetworkC16orf86
Wikipedia pathwaysC16orf86
Orthology - Evolution
OrthoDB388284
GeneTree (enSembl)ENSG00000159761
Phylogenetic Trees/Animal Genes : TreeFamC16orf86
HOVERGENQ6ZW13
HOGENOMQ6ZW13
Homologs : HomoloGeneC16orf86
Homology/Alignments : Family Browser (UCSC)C16orf86
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf86
dbVarC16orf86
ClinVarC16orf86
1000_GenomesC16orf86 
Exome Variant ServerC16orf86
ExAC (Exome Aggregation Consortium)C16orf86 (select the gene name)
Genetic variants : HAPMAP388284
Genomic Variants (DGV)C16orf86 [DGVbeta]
DECIPHERC16orf86 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf86 
Mutations
ICGC Data PortalC16orf86 
TCGA Data PortalC16orf86 
Broad Tumor PortalC16orf86
OASIS PortalC16orf86 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf86  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf86
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf86
DgiDB (Drug Gene Interaction Database)C16orf86
DoCM (Curated mutations)C16orf86 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf86 (select a term)
intoGenC16orf86
Cancer3DC16orf86(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf86
Genetic Testing Registry C16orf86
NextProtQ6ZW13 [Medical]
TSGene388284
GENETestsC16orf86
Target ValidationC16orf86
Huge Navigator C16orf86 [HugePedia]
snp3D : Map Gene to Disease388284
BioCentury BCIQC16orf86
ClinGenC16orf86
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388284
Chemical/Pharm GKB GenePA162378445
Clinical trialC16orf86
Miscellaneous
canSAR (ICR)C16orf86 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf86
EVEXC16orf86
GoPubMedC16orf86
iHOPC16orf86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:51 CEST 2017

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