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C16orf87 (chromosome 16 open reading frame 87)

Identity

Other alias-
HGNC (Hugo) C16orf87
LocusID (NCBI) 388272
Atlas_Id 60974
Location 16q11.2  [Link to chromosome band 16q11]
Location_base_pair Starts at 46835959 and ends at 46865074 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C16orf87 (16q11.2) / ATXN2 (12q24.12)C16orf87 (16q11.2) / CNOT1 (16q21)C16orf87 ATXN2
C16orf87 CNOT1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf87   33754
Cards
Entrez_Gene (NCBI)C16orf87  388272  chromosome 16 open reading frame 87
Aliases
GeneCards (Weizmann)C16orf87
Ensembl hg19 (Hinxton)ENSG00000155330 [Gene_View]  chr16:46835959-46865074 [Contig_View]  C16orf87 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155330 [Gene_View]  chr16:46835959-46865074 [Contig_View]  C16orf87 [Vega]
ICGC DataPortalENSG00000155330
TCGA cBioPortalC16orf87
AceView (NCBI)C16orf87
Genatlas (Paris)C16orf87
WikiGenes388272
SOURCE (Princeton)C16orf87
Genetics Home Reference (NIH)C16orf87
Genomic and cartography
GoldenPath hg19 (UCSC)C16orf87  -     chr16:46835959-46865074 -  16q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C16orf87  -     16q11.2   [Description]    (hg38-Dec_2013)
EnsemblC16orf87 - 16q11.2 [CytoView hg19]  C16orf87 - 16q11.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf87 [Mapview hg19]  C16orf87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC056676 BX647945 HQ447695
RefSeq transcript (Entrez)NM_001001436
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)C16orf87
Cluster EST : UnigeneHs.406551 [ NCBI ]
CGAP (NCI)Hs.406551
Alternative Splicing GalleryENSG00000155330
Gene ExpressionC16orf87 [ NCBI-GEO ]   C16orf87 [ EBI - ARRAY_EXPRESS ]   C16orf87 [ SEEK ]   C16orf87 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388272
GTEX Portal (Tissue expression)C16orf87
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PH81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PH81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PH81
Splice isoforms : SwissVarQ6PH81
PhosPhoSitePlusQ6PH81
Domains : Interpro (EBI)UPF0547   
Domain families : Pfam (Sanger)UPF0547 (PF10571)   
Domain families : Pfam (NCBI)pfam10571   
Conserved Domain (NCBI)C16orf87
DMDM Disease mutations388272
Blocks (Seattle)C16orf87
SuperfamilyQ6PH81
Human Protein AtlasENSG00000155330
Peptide AtlasQ6PH81
HPRD17370
IPIIPI00067538   IPI00744097   
Protein Interaction databases
DIP (DOE-UCLA)Q6PH81
IntAct (EBI)Q6PH81
FunCoupENSG00000155330
BioGRIDC16orf87
STRING (EMBL)C16orf87
ZODIACC16orf87
Ontologies - Pathways
QuickGOQ6PH81
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC16orf87
Atlas of Cancer Signalling NetworkC16orf87
Wikipedia pathwaysC16orf87
Orthology - Evolution
OrthoDB388272
GeneTree (enSembl)ENSG00000155330
Phylogenetic Trees/Animal Genes : TreeFamC16orf87
HOVERGENQ6PH81
HOGENOMQ6PH81
Homologs : HomoloGeneC16orf87
Homology/Alignments : Family Browser (UCSC)C16orf87
Gene fusions - Rearrangements
Fusion: TCGAC16orf87 ATXN2
Fusion: TCGAC16orf87 CNOT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf87 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf87
dbVarC16orf87
ClinVarC16orf87
1000_GenomesC16orf87 
Exome Variant ServerC16orf87
ExAC (Exome Aggregation Consortium)C16orf87 (select the gene name)
Genetic variants : HAPMAP388272
Genomic Variants (DGV)C16orf87 [DGVbeta]
DECIPHER (Syndromes)16:46835959-46865074  ENSG00000155330
CONAN: Copy Number AnalysisC16orf87 
Mutations
ICGC Data PortalC16orf87 
TCGA Data PortalC16orf87 
Broad Tumor PortalC16orf87
OASIS PortalC16orf87 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf87  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf87
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf87
DgiDB (Drug Gene Interaction Database)C16orf87
DoCM (Curated mutations)C16orf87 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf87 (select a term)
intoGenC16orf87
Cancer3DC16orf87(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf87
Genetic Testing Registry C16orf87
NextProtQ6PH81 [Medical]
TSGene388272
GENETestsC16orf87
Huge Navigator C16orf87 [HugePedia]
snp3D : Map Gene to Disease388272
BioCentury BCIQC16orf87
ClinGenC16orf87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388272
Chemical/Pharm GKB GenePA162378458
Clinical trialC16orf87
Miscellaneous
canSAR (ICR)C16orf87 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf87
EVEXC16orf87
GoPubMedC16orf87
iHOPC16orf87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:38 CET 2017

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