Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C16orf89 (chromosome 16 open reading frame 89)

Identity

Alias_symbol (synonym)MGC45438
Other alias-
HGNC (Hugo) C16orf89
LocusID (NCBI) 146556
Atlas_Id 60975
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 5044122 and ends at 5066145 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C16orf89 (16p13.3) / FOXP3 (Xp11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C16orf89   28687
Cards
Entrez_Gene (NCBI)C16orf89  146556  chromosome 16 open reading frame 89
Aliases
GeneCards (Weizmann)C16orf89
Ensembl hg19 (Hinxton)ENSG00000153446 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153446 [Gene_View]  ENSG00000153446 [Sequence]  chr16:5044122-5066145 [Contig_View]  C16orf89 [Vega]
ICGC DataPortalENSG00000153446
TCGA cBioPortalC16orf89
AceView (NCBI)C16orf89
Genatlas (Paris)C16orf89
WikiGenes146556
SOURCE (Princeton)C16orf89
Genetics Home Reference (NIH)C16orf89
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf89  -     chr16:5044122-5066145 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf89  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathC16orf89 - 16p13.3 [CytoView hg19]  C16orf89 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000153446
Mapping of homologs : NCBIC16orf89 [Mapview hg19]  C16orf89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075242 AK300708 AY358483 BC033681 CF272639
RefSeq transcript (Entrez)NM_001098514 NM_152459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf89
Cluster EST : UnigeneHs.11782 [ NCBI ]
CGAP (NCI)Hs.11782
Alternative Splicing GalleryENSG00000153446
Gene ExpressionC16orf89 [ NCBI-GEO ]   C16orf89 [ EBI - ARRAY_EXPRESS ]   C16orf89 [ SEEK ]   C16orf89 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146556
GTEX Portal (Tissue expression)C16orf89
Human Protein AtlasENSG00000153446-C16orf89 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX73
Splice isoforms : SwissVarQ6UX73
PhosPhoSitePlusQ6UX73
Domains : Interpro (EBI)DUF4735   
Domain families : Pfam (Sanger)DUF4735 (PF15882)   
Domain families : Pfam (NCBI)pfam15882   
Conserved Domain (NCBI)C16orf89
DMDM Disease mutations146556
Blocks (Seattle)C16orf89
SuperfamilyQ6UX73
Human Protein Atlas [tissue]ENSG00000153446-C16orf89 [tissue]
Peptide AtlasQ6UX73
HPRD11353
IPIIPI00886722   IPI00432405   IPI00166766   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX73
IntAct (EBI)Q6UX73
FunCoupENSG00000153446
BioGRIDC16orf89
STRING (EMBL)C16orf89
ZODIACC16orf89
Ontologies - Pathways
QuickGOQ6UX73
Ontology : AmiGOcytosol  cytosol  membrane  membrane  protein homodimerization activity  extracellular exosome  
Ontology : EGO-EBIcytosol  cytosol  membrane  membrane  protein homodimerization activity  extracellular exosome  
NDEx NetworkC16orf89
Atlas of Cancer Signalling NetworkC16orf89
Wikipedia pathwaysC16orf89
Orthology - Evolution
OrthoDB146556
GeneTree (enSembl)ENSG00000153446
Phylogenetic Trees/Animal Genes : TreeFamC16orf89
HOGENOMQ6UX73
Homologs : HomoloGeneC16orf89
Homology/Alignments : Family Browser (UCSC)C16orf89
Gene fusions - Rearrangements
Fusion : QuiverC16orf89
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf89
dbVarC16orf89
ClinVarC16orf89
1000_GenomesC16orf89 
Exome Variant ServerC16orf89
ExAC (Exome Aggregation Consortium)ENSG00000153446
GNOMAD BrowserENSG00000153446
Varsome BrowserC16orf89
Genetic variants : HAPMAP146556
Genomic Variants (DGV)C16orf89 [DGVbeta]
DECIPHERC16orf89 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf89 
Mutations
ICGC Data PortalC16orf89 
TCGA Data PortalC16orf89 
Broad Tumor PortalC16orf89
OASIS PortalC16orf89 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf89  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC16orf89
Mutations and Diseases : HGMDC16orf89
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf89
DgiDB (Drug Gene Interaction Database)C16orf89
DoCM (Curated mutations)C16orf89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf89 (select a term)
intoGenC16orf89
Cancer3DC16orf89(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC16orf89
MedgenC16orf89
Genetic Testing Registry C16orf89
NextProtQ6UX73 [Medical]
TSGene146556
GENETestsC16orf89
Target ValidationC16orf89
Huge Navigator C16orf89 [HugePedia]
snp3D : Map Gene to Disease146556
BioCentury BCIQC16orf89
ClinGenC16orf89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146556
Chemical/Pharm GKB GenePA162378486
Clinical trialC16orf89
Miscellaneous
canSAR (ICR)C16orf89 (select the gene name)
DataMed IndexC16orf89
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf89
EVEXC16orf89
GoPubMedC16orf89
iHOPC16orf89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:21:22 CEST 2019
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