Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf90 (chromosome 16 open reading frame 90)

Identity

Alias_symbol (synonym)LOC646174
Other alias-
HGNC (Hugo) C16orf90
LocusID (NCBI) 646174
Atlas_Id 60976
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3493484 and ends at 3495421 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF597 (16p13.3) / C16orf90 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf90   34455
Cards
Entrez_Gene (NCBI)C16orf90  646174  chromosome 16 open reading frame 90
Aliases
GeneCards (Weizmann)C16orf90
Ensembl hg19 (Hinxton)ENSG00000215131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215131 [Gene_View]  chr16:3493484-3495421 [Contig_View]  C16orf90 [Vega]
ICGC DataPortalENSG00000215131
TCGA cBioPortalC16orf90
AceView (NCBI)C16orf90
Genatlas (Paris)C16orf90
WikiGenes646174
SOURCE (Princeton)C16orf90
Genetics Home Reference (NIH)C16orf90
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf90  -     chr16:3493484-3495421 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf90  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblC16orf90 - 16p13.3 [CytoView hg19]  C16orf90 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf90 [Mapview hg19]  C16orf90 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001080524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf90
Cluster EST : UnigeneHs.632224 [ NCBI ]
CGAP (NCI)Hs.632224
Alternative Splicing GalleryENSG00000215131
Gene ExpressionC16orf90 [ NCBI-GEO ]   C16orf90 [ EBI - ARRAY_EXPRESS ]   C16orf90 [ SEEK ]   C16orf90 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf90 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646174
GTEX Portal (Tissue expression)C16orf90
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MZG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MZG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MZG2
Splice isoforms : SwissVarA8MZG2
PhosPhoSitePlusA8MZG2
Domains : Interpro (EBI)DUF4644   
Domain families : Pfam (Sanger)DUF4644 (PF15486)   
Domain families : Pfam (NCBI)pfam15486   
Conserved Domain (NCBI)C16orf90
DMDM Disease mutations646174
Blocks (Seattle)C16orf90
SuperfamilyA8MZG2
Human Protein AtlasENSG00000215131
Peptide AtlasA8MZG2
IPIIPI00926418   IPI00828031   IPI00952685   
Protein Interaction databases
DIP (DOE-UCLA)A8MZG2
IntAct (EBI)A8MZG2
FunCoupENSG00000215131
BioGRIDC16orf90
STRING (EMBL)C16orf90
ZODIACC16orf90
Ontologies - Pathways
QuickGOA8MZG2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf90
Atlas of Cancer Signalling NetworkC16orf90
Wikipedia pathwaysC16orf90
Orthology - Evolution
OrthoDB646174
GeneTree (enSembl)ENSG00000215131
Phylogenetic Trees/Animal Genes : TreeFamC16orf90
HOVERGENA8MZG2
HOGENOMA8MZG2
Homologs : HomoloGeneC16orf90
Homology/Alignments : Family Browser (UCSC)C16orf90
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf90 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf90
dbVarC16orf90
ClinVarC16orf90
1000_GenomesC16orf90 
Exome Variant ServerC16orf90
ExAC (Exome Aggregation Consortium)C16orf90 (select the gene name)
Genetic variants : HAPMAP646174
Genomic Variants (DGV)C16orf90 [DGVbeta]
DECIPHERC16orf90 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf90 
Mutations
ICGC Data PortalC16orf90 
TCGA Data PortalC16orf90 
Broad Tumor PortalC16orf90
OASIS PortalC16orf90 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf90  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf90
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf90
DgiDB (Drug Gene Interaction Database)C16orf90
DoCM (Curated mutations)C16orf90 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf90 (select a term)
intoGenC16orf90
Cancer3DC16orf90(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf90
Genetic Testing Registry C16orf90
NextProtA8MZG2 [Medical]
TSGene646174
GENETestsC16orf90
Target ValidationC16orf90
Huge Navigator C16orf90 [HugePedia]
snp3D : Map Gene to Disease646174
BioCentury BCIQC16orf90
ClinGenC16orf90
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646174
Chemical/Pharm GKB GenePA162378507
Clinical trialC16orf90
Miscellaneous
canSAR (ICR)C16orf90 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf90
EVEXC16orf90
GoPubMedC16orf90
iHOPC16orf90
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:30 CEST 2017

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