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C16orf91 (chromosome 16 open reading frame 91)

Identity

Alias_symbol (synonym)gs103
CCSMST1
Other aliasURLC5
HGNC (Hugo) C16orf91
LocusID (NCBI) 283951
Atlas_Id 60977
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1419744 and ends at 1420800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf91   27558
Cards
Entrez_Gene (NCBI)C16orf91  283951  chromosome 16 open reading frame 91
AliasesCCSMST1; URLC5; gs103
GeneCards (Weizmann)C16orf91
Ensembl hg19 (Hinxton)ENSG00000174109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174109 [Gene_View]  chr16:1419744-1420800 [Contig_View]  C16orf91 [Vega]
ICGC DataPortalENSG00000174109
TCGA cBioPortalC16orf91
AceView (NCBI)C16orf91
Genatlas (Paris)C16orf91
WikiGenes283951
SOURCE (Princeton)C16orf91
Genetics Home Reference (NIH)C16orf91
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf91  -     chr16:1419744-1420800 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf91  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblC16orf91 - 16p13.3 [CytoView hg19]  C16orf91 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf91 [Mapview hg19]  C16orf91 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB101207 AW014549 BC023590 BC063715 BC073941
RefSeq transcript (Entrez)NM_001010878 NM_001272051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf91
Cluster EST : UnigeneHs.58373 [ NCBI ]
CGAP (NCI)Hs.58373
Alternative Splicing GalleryENSG00000174109
Gene ExpressionC16orf91 [ NCBI-GEO ]   C16orf91 [ EBI - ARRAY_EXPRESS ]   C16orf91 [ SEEK ]   C16orf91 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf91 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283951
GTEX Portal (Tissue expression)C16orf91
Human Protein AtlasENSG00000174109-C16orf91 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0I0
Splice isoforms : SwissVarQ4G0I0
PhosPhoSitePlusQ4G0I0
Domains : Interpro (EBI)CCSMST1    CCSMST1_fam   
Domain families : Pfam (Sanger)CCSMST1 (PF15013)   
Domain families : Pfam (NCBI)pfam15013   
Conserved Domain (NCBI)C16orf91
DMDM Disease mutations283951
Blocks (Seattle)C16orf91
SuperfamilyQ4G0I0
Human Protein Atlas [tissue]ENSG00000174109-C16orf91 [tissue]
Peptide AtlasQ4G0I0
HPRD17332
IPIIPI00290358   IPI00943230   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0I0
IntAct (EBI)Q4G0I0
FunCoupENSG00000174109
BioGRIDC16orf91
STRING (EMBL)C16orf91
ZODIACC16orf91
Ontologies - Pathways
QuickGOQ4G0I0
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC16orf91
Atlas of Cancer Signalling NetworkC16orf91
Wikipedia pathwaysC16orf91
Orthology - Evolution
OrthoDB283951
GeneTree (enSembl)ENSG00000174109
Phylogenetic Trees/Animal Genes : TreeFamC16orf91
HOVERGENQ4G0I0
HOGENOMQ4G0I0
Homologs : HomoloGeneC16orf91
Homology/Alignments : Family Browser (UCSC)C16orf91
Gene fusions - Rearrangements
Fusion: Tumor Portal C16orf91
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf91 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf91
dbVarC16orf91
ClinVarC16orf91
1000_GenomesC16orf91 
Exome Variant ServerC16orf91
ExAC (Exome Aggregation Consortium)ENSG00000174109
GNOMAD BrowserENSG00000174109
Genetic variants : HAPMAP283951
Genomic Variants (DGV)C16orf91 [DGVbeta]
DECIPHERC16orf91 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf91 
Mutations
ICGC Data PortalC16orf91 
TCGA Data PortalC16orf91 
Broad Tumor PortalC16orf91
OASIS PortalC16orf91 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf91  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf91
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf91
DgiDB (Drug Gene Interaction Database)C16orf91
DoCM (Curated mutations)C16orf91 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf91 (select a term)
intoGenC16orf91
Cancer3DC16orf91(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf91
Genetic Testing Registry C16orf91
NextProtQ4G0I0 [Medical]
TSGene283951
GENETestsC16orf91
Target ValidationC16orf91
Huge Navigator C16orf91 [HugePedia]
snp3D : Map Gene to Disease283951
BioCentury BCIQC16orf91
ClinGenC16orf91
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283951
Chemical/Pharm GKB GenePA164716853
Clinical trialC16orf91
Miscellaneous
canSAR (ICR)C16orf91 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf91
EVEXC16orf91
GoPubMedC16orf91
iHOPC16orf91
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:50 CET 2017

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