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C16orf92 (chromosome 16 open reading frame 92)

Identity

Alias_symbol (synonym)FLJ25404
Other alias-
HGNC (Hugo) C16orf92
LocusID (NCBI) 146378
Atlas_Id 60978
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30034655 and ends at 30036023 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf92   26346
Cards
Entrez_Gene (NCBI)C16orf92  146378  chromosome 16 open reading frame 92
Aliases
GeneCards (Weizmann)C16orf92
Ensembl hg19 (Hinxton)ENSG00000167194 [Gene_View]  chr16:30034655-30036023 [Contig_View]  C16orf92 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167194 [Gene_View]  chr16:30034655-30036023 [Contig_View]  C16orf92 [Vega]
ICGC DataPortalENSG00000167194
TCGA cBioPortalC16orf92
AceView (NCBI)C16orf92
Genatlas (Paris)C16orf92
WikiGenes146378
SOURCE (Princeton)C16orf92
Genetics Home Reference (NIH)C16orf92
Genomic and cartography
GoldenPath hg19 (UCSC)C16orf92  -     chr16:30034655-30036023 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C16orf92  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblC16orf92 - 16p11.2 [CytoView hg19]  C16orf92 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf92 [Mapview hg19]  C16orf92 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058133 BC101433 BC101434 BC101435 BC101436
RefSeq transcript (Entrez)NM_001109659 NM_001109660
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)C16orf92
Cluster EST : UnigeneHs.651588 [ NCBI ]
CGAP (NCI)Hs.651588
Alternative Splicing GalleryENSG00000167194
Gene ExpressionC16orf92 [ NCBI-GEO ]   C16orf92 [ EBI - ARRAY_EXPRESS ]   C16orf92 [ SEEK ]   C16orf92 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf92 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146378
GTEX Portal (Tissue expression)C16orf92
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LL3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LL3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LL3
Splice isoforms : SwissVarQ96LL3
PhosPhoSitePlusQ96LL3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf92
DMDM Disease mutations146378
Blocks (Seattle)C16orf92
SuperfamilyQ96LL3
Human Protein AtlasENSG00000167194
Peptide AtlasQ96LL3
IPIIPI00065076   IPI00639835   
Protein Interaction databases
DIP (DOE-UCLA)Q96LL3
IntAct (EBI)Q96LL3
FunCoupENSG00000167194
BioGRIDC16orf92
STRING (EMBL)C16orf92
ZODIACC16orf92
Ontologies - Pathways
QuickGOQ96LL3
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC16orf92
Atlas of Cancer Signalling NetworkC16orf92
Wikipedia pathwaysC16orf92
Orthology - Evolution
OrthoDB146378
GeneTree (enSembl)ENSG00000167194
Phylogenetic Trees/Animal Genes : TreeFamC16orf92
HOVERGENQ96LL3
HOGENOMQ96LL3
Homologs : HomoloGeneC16orf92
Homology/Alignments : Family Browser (UCSC)C16orf92
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf92 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf92
dbVarC16orf92
ClinVarC16orf92
1000_GenomesC16orf92 
Exome Variant ServerC16orf92
ExAC (Exome Aggregation Consortium)C16orf92 (select the gene name)
Genetic variants : HAPMAP146378
Genomic Variants (DGV)C16orf92 [DGVbeta]
DECIPHER (Syndromes)16:30034655-30036023  ENSG00000167194
CONAN: Copy Number AnalysisC16orf92 
Mutations
ICGC Data PortalC16orf92 
TCGA Data PortalC16orf92 
Broad Tumor PortalC16orf92
OASIS PortalC16orf92 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf92  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf92
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf92
DgiDB (Drug Gene Interaction Database)C16orf92
DoCM (Curated mutations)C16orf92 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf92 (select a term)
intoGenC16orf92
Cancer3DC16orf92(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf92
Genetic Testing Registry C16orf92
NextProtQ96LL3 [Medical]
TSGene146378
GENETestsC16orf92
Huge Navigator C16orf92 [HugePedia]
snp3D : Map Gene to Disease146378
BioCentury BCIQC16orf92
ClinGenC16orf92
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146378
Chemical/Pharm GKB GenePA164716866
Clinical trialC16orf92
Miscellaneous
canSAR (ICR)C16orf92 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf92
EVEXC16orf92
GoPubMedC16orf92
iHOPC16orf92
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:39 CET 2017

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