Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C16orf93 (chromosome 16 open reading frame 93)

Identity

Other alias-
HGNC (Hugo) C16orf93
LocusID (NCBI) 90835
Atlas_Id 60979
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 30768744 and ends at 30773565 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf93   28078
Cards
Entrez_Gene (NCBI)C16orf93  90835  chromosome 16 open reading frame 93
Aliases
GeneCards (Weizmann)C16orf93
Ensembl hg19 (Hinxton)ENSG00000196118 [Gene_View]  chr16:30768744-30773565 [Contig_View]  C16orf93 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196118 [Gene_View]  chr16:30768744-30773565 [Contig_View]  C16orf93 [Vega]
ICGC DataPortalENSG00000196118
TCGA cBioPortalC16orf93
AceView (NCBI)C16orf93
Genatlas (Paris)C16orf93
WikiGenes90835
SOURCE (Princeton)C16orf93
Genetics Home Reference (NIH)C16orf93
Genomic and cartography
GoldenPath hg19 (UCSC)C16orf93  -     chr16:30768744-30773565 -  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C16orf93  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblC16orf93 - 16p11.2 [CytoView hg19]  C16orf93 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIC16orf93 [Mapview hg19]  C16orf93 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK307279 AL122109 BC042548 BC063391 BC073881
RefSeq transcript (Entrez)NM_001014979 NM_001195620
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_016616 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)C16orf93
Cluster EST : UnigeneHs.724010 [ NCBI ]
CGAP (NCI)Hs.724010
Alternative Splicing GalleryENSG00000196118
Gene ExpressionC16orf93 [ NCBI-GEO ]   C16orf93 [ EBI - ARRAY_EXPRESS ]   C16orf93 [ SEEK ]   C16orf93 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf93 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90835
GTEX Portal (Tissue expression)C16orf93
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1A4V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1A4V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1A4V9
Splice isoforms : SwissVarA1A4V9
PhosPhoSitePlusA1A4V9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf93
DMDM Disease mutations90835
Blocks (Seattle)C16orf93
SuperfamilyA1A4V9
Human Protein AtlasENSG00000196118
Peptide AtlasA1A4V9
HPRD18705
IPIIPI00787135   IPI00885135   IPI00885184   IPI01012085   IPI01009897   IPI01010410   
Protein Interaction databases
DIP (DOE-UCLA)A1A4V9
IntAct (EBI)A1A4V9
FunCoupENSG00000196118
BioGRIDC16orf93
STRING (EMBL)C16orf93
ZODIACC16orf93
Ontologies - Pathways
QuickGOA1A4V9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf93
Atlas of Cancer Signalling NetworkC16orf93
Wikipedia pathwaysC16orf93
Orthology - Evolution
OrthoDB90835
GeneTree (enSembl)ENSG00000196118
Phylogenetic Trees/Animal Genes : TreeFamC16orf93
HOVERGENA1A4V9
HOGENOMA1A4V9
Homologs : HomoloGeneC16orf93
Homology/Alignments : Family Browser (UCSC)C16orf93
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf93
dbVarC16orf93
ClinVarC16orf93
1000_GenomesC16orf93 
Exome Variant ServerC16orf93
ExAC (Exome Aggregation Consortium)C16orf93 (select the gene name)
Genetic variants : HAPMAP90835
Genomic Variants (DGV)C16orf93 [DGVbeta]
DECIPHER (Syndromes)16:30768744-30773565  ENSG00000196118
CONAN: Copy Number AnalysisC16orf93 
Mutations
ICGC Data PortalC16orf93 
TCGA Data PortalC16orf93 
Broad Tumor PortalC16orf93
OASIS PortalC16orf93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf93  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf93
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf93
DgiDB (Drug Gene Interaction Database)C16orf93
DoCM (Curated mutations)C16orf93 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf93 (select a term)
intoGenC16orf93
Cancer3DC16orf93(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf93
Genetic Testing Registry C16orf93
NextProtA1A4V9 [Medical]
TSGene90835
GENETestsC16orf93
Huge Navigator C16orf93 [HugePedia]
snp3D : Map Gene to Disease90835
BioCentury BCIQC16orf93
ClinGenC16orf93
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90835
Chemical/Pharm GKB GenePA164716879
Clinical trialC16orf93
Miscellaneous
canSAR (ICR)C16orf93 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf93
EVEXC16orf93
GoPubMedC16orf93
iHOPC16orf93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:39 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.