Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C16orf96 (chromosome 16 open reading frame 96)

Identity

Other alias-
HGNC (Hugo) C16orf96
LocusID (NCBI) 342346
Atlas_Id 60981
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 4556490 and ends at 4600317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf96   40031
Cards
Entrez_Gene (NCBI)C16orf96  342346  chromosome 16 open reading frame 96
Aliases
GeneCards (Weizmann)C16orf96
Ensembl hg19 (Hinxton)ENSG00000205832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205832 [Gene_View]  chr16:4556490-4600317 [Contig_View]  C16orf96 [Vega]
ICGC DataPortalENSG00000205832
TCGA cBioPortalC16orf96
AceView (NCBI)C16orf96
Genatlas (Paris)C16orf96
WikiGenes342346
SOURCE (Princeton)C16orf96
Genetics Home Reference (NIH)C16orf96
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf96  -     chr16:4556490-4600317 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf96  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblC16orf96 - 16p13.3 [CytoView hg19]  C16orf96 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIC16orf96 [Mapview hg19]  C16orf96 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf96
Cluster EST : UnigeneHs.684212 [ NCBI ]
CGAP (NCI)Hs.684212
Alternative Splicing GalleryENSG00000205832
Gene ExpressionC16orf96 [ NCBI-GEO ]   C16orf96 [ EBI - ARRAY_EXPRESS ]   C16orf96 [ SEEK ]   C16orf96 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf96 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342346
GTEX Portal (Tissue expression)C16orf96
Human Protein AtlasENSG00000205832-C16orf96 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNT2
Splice isoforms : SwissVarA6NNT2
PhosPhoSitePlusA6NNT2
Domains : Interpro (EBI)DUF4795   
Domain families : Pfam (Sanger)DUF4795 (PF16043)   
Domain families : Pfam (NCBI)pfam16043   
Conserved Domain (NCBI)C16orf96
DMDM Disease mutations342346
Blocks (Seattle)C16orf96
SuperfamilyA6NNT2
Human Protein Atlas [tissue]ENSG00000205832-C16orf96 [tissue]
Peptide AtlasA6NNT2
IPIIPI00940746   
Protein Interaction databases
DIP (DOE-UCLA)A6NNT2
IntAct (EBI)A6NNT2
FunCoupENSG00000205832
BioGRIDC16orf96
STRING (EMBL)C16orf96
ZODIACC16orf96
Ontologies - Pathways
QuickGOA6NNT2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf96
Atlas of Cancer Signalling NetworkC16orf96
Wikipedia pathwaysC16orf96
Orthology - Evolution
OrthoDB342346
GeneTree (enSembl)ENSG00000205832
Phylogenetic Trees/Animal Genes : TreeFamC16orf96
HOVERGENA6NNT2
HOGENOMA6NNT2
Homologs : HomoloGeneC16orf96
Homology/Alignments : Family Browser (UCSC)C16orf96
Gene fusions - Rearrangements
Fusion: Tumor Portal C16orf96
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf96 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf96
dbVarC16orf96
ClinVarC16orf96
1000_GenomesC16orf96 
Exome Variant ServerC16orf96
ExAC (Exome Aggregation Consortium)ENSG00000205832
GNOMAD BrowserENSG00000205832
Genetic variants : HAPMAP342346
Genomic Variants (DGV)C16orf96 [DGVbeta]
DECIPHERC16orf96 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf96 
Mutations
ICGC Data PortalC16orf96 
TCGA Data PortalC16orf96 
Broad Tumor PortalC16orf96
OASIS PortalC16orf96 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf96  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC16orf96
BioMutasearch C16orf96
DgiDB (Drug Gene Interaction Database)C16orf96
DoCM (Curated mutations)C16orf96 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf96 (select a term)
intoGenC16orf96
Cancer3DC16orf96(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf96
Genetic Testing Registry C16orf96
NextProtA6NNT2 [Medical]
TSGene342346
GENETestsC16orf96
Target ValidationC16orf96
Huge Navigator C16orf96 [HugePedia]
snp3D : Map Gene to Disease342346
BioCentury BCIQC16orf96
ClinGenC16orf96
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342346
Chemical/Pharm GKB GenePA166049053
Clinical trialC16orf96
Miscellaneous
canSAR (ICR)C16orf96 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf96
EVEXC16orf96
GoPubMedC16orf96
iHOPC16orf96
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:39:51 CET 2017

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