Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C16orf97 (chromosome 16 open reading frame 97)

Identity

Other alias-
HGNC (Hugo) C16orf97
LocusID (NCBI) 388276
Atlas_Id 60982
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 52026352 and ends at 52073935 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C16orf97   44658
Cards
Entrez_Gene (NCBI)C16orf97  388276  chromosome 16 open reading frame 97
Aliases
GeneCards (Weizmann)C16orf97
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:52026352-52073935 [Contig_View]  C16orf97 [Vega]
TCGA cBioPortalC16orf97
AceView (NCBI)C16orf97
Genatlas (Paris)C16orf97
WikiGenes388276
SOURCE (Princeton)C16orf97
Genetics Home Reference (NIH)C16orf97
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf97  -     chr16:52026352-52073935 -  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf97  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblC16orf97 - 16q12.1 [CytoView hg19]  C16orf97 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIC16orf97 [Mapview hg19]  C16orf97 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX096212
RefSeq transcript (Entrez)NM_001242473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf97
Cluster EST : UnigeneHs.534669 [ NCBI ]
CGAP (NCI)Hs.534669
Gene ExpressionC16orf97 [ NCBI-GEO ]   C16orf97 [ EBI - ARRAY_EXPRESS ]   C16orf97 [ SEEK ]   C16orf97 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf97 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388276
GTEX Portal (Tissue expression)C16orf97
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BN30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BN30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BN30
Splice isoforms : SwissVarH3BN30
PhosPhoSitePlusH3BN30
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C16orf97
DMDM Disease mutations388276
Blocks (Seattle)C16orf97
SuperfamilyH3BN30
Peptide AtlasH3BN30
Protein Interaction databases
DIP (DOE-UCLA)H3BN30
IntAct (EBI)H3BN30
BioGRIDC16orf97
STRING (EMBL)C16orf97
ZODIACC16orf97
Ontologies - Pathways
QuickGOH3BN30
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC16orf97
Atlas of Cancer Signalling NetworkC16orf97
Wikipedia pathwaysC16orf97
Orthology - Evolution
OrthoDB388276
Phylogenetic Trees/Animal Genes : TreeFamC16orf97
HOVERGENH3BN30
HOGENOMH3BN30
Homologs : HomoloGeneC16orf97
Homology/Alignments : Family Browser (UCSC)C16orf97
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf97 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf97
dbVarC16orf97
ClinVarC16orf97
1000_GenomesC16orf97 
Exome Variant ServerC16orf97
ExAC (Exome Aggregation Consortium)C16orf97 (select the gene name)
Genetic variants : HAPMAP388276
Genomic Variants (DGV)C16orf97 [DGVbeta]
DECIPHERC16orf97 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf97 
Mutations
ICGC Data PortalC16orf97 
TCGA Data PortalC16orf97 
Broad Tumor PortalC16orf97
OASIS PortalC16orf97 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC16orf97
BioMutasearch C16orf97
DgiDB (Drug Gene Interaction Database)C16orf97
DoCM (Curated mutations)C16orf97 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf97 (select a term)
intoGenC16orf97
Cancer3DC16orf97(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC16orf97
Genetic Testing Registry C16orf97
NextProtH3BN30 [Medical]
TSGene388276
GENETestsC16orf97
Huge Navigator C16orf97 [HugePedia]
snp3D : Map Gene to Disease388276
BioCentury BCIQC16orf97
ClinGenC16orf97
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388276
Chemical/Pharm GKB GenePA166049151
Clinical trialC16orf97
Miscellaneous
canSAR (ICR)C16orf97 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf97
EVEXC16orf97
GoPubMedC16orf97
iHOPC16orf97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:02:43 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.