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C17orf100 (chromosome 17 open reading frame 100)

Identity

Alias_symbol (synonym)LOC388327
Other alias-
HGNC (Hugo) C17orf100
LocusID (NCBI) 388327
Atlas_Id 60983
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 6651739 and ends at 6653298 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf100   34494
Cards
Entrez_Gene (NCBI)C17orf100  388327  chromosome 17 open reading frame 100
Aliases
GeneCards (Weizmann)C17orf100
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:6651739-6653298 [Contig_View]  C17orf100 [Vega]
TCGA cBioPortalC17orf100
AceView (NCBI)C17orf100
Genatlas (Paris)C17orf100
WikiGenes388327
SOURCE (Princeton)C17orf100
Genetics Home Reference (NIH)C17orf100
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf100  -     chr17:6651739-6653298 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf100  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblC17orf100 - 17p13.1 [CytoView hg19]  C17orf100 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIC17orf100 [Mapview hg19]  C17orf100 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC028174 BC038956 BC052606 BC067087 BC082254
RefSeq transcript (Entrez)NM_001105520
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf100
Cluster EST : UnigeneHs.262480 [ NCBI ]
CGAP (NCI)Hs.262480
Gene ExpressionC17orf100 [ NCBI-GEO ]   C17orf100 [ EBI - ARRAY_EXPRESS ]   C17orf100 [ SEEK ]   C17orf100 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf100 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388327
GTEX Portal (Tissue expression)C17orf100
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MU93   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MU93  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MU93
Splice isoforms : SwissVarA8MU93
PhosPhoSitePlusA8MU93
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf100
DMDM Disease mutations388327
Blocks (Seattle)C17orf100
SuperfamilyA8MU93
Peptide AtlasA8MU93
IPIIPI00744922   
Protein Interaction databases
DIP (DOE-UCLA)A8MU93
IntAct (EBI)A8MU93
BioGRIDC17orf100
STRING (EMBL)C17orf100
ZODIACC17orf100
Ontologies - Pathways
QuickGOA8MU93
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf100
Atlas of Cancer Signalling NetworkC17orf100
Wikipedia pathwaysC17orf100
Orthology - Evolution
OrthoDB388327
Phylogenetic Trees/Animal Genes : TreeFamC17orf100
HOVERGENA8MU93
HOGENOMA8MU93
Homologs : HomoloGeneC17orf100
Homology/Alignments : Family Browser (UCSC)C17orf100
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf100 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf100
dbVarC17orf100
ClinVarC17orf100
1000_GenomesC17orf100 
Exome Variant ServerC17orf100
ExAC (Exome Aggregation Consortium)C17orf100 (select the gene name)
Genetic variants : HAPMAP388327
Genomic Variants (DGV)C17orf100 [DGVbeta]
DECIPHERC17orf100 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf100 
Mutations
ICGC Data PortalC17orf100 
TCGA Data PortalC17orf100 
Broad Tumor PortalC17orf100
OASIS PortalC17orf100 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf100  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf100
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf100
DgiDB (Drug Gene Interaction Database)C17orf100
DoCM (Curated mutations)C17orf100 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf100 (select a term)
intoGenC17orf100
Cancer3DC17orf100(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf100
Genetic Testing Registry C17orf100
NextProtA8MU93 [Medical]
TSGene388327
GENETestsC17orf100
Huge Navigator C17orf100 [HugePedia]
snp3D : Map Gene to Disease388327
BioCentury BCIQC17orf100
ClinGenC17orf100
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388327
Chemical/Pharm GKB GenePA164716900
Clinical trialC17orf100
Miscellaneous
canSAR (ICR)C17orf100 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf100
EVEXC17orf100
GoPubMedC17orf100
iHOPC17orf100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:02:43 CEST 2017

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