Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf102 (chromosome 17 open reading frame 102)

Identity

Alias_symbol (synonym)FLJ44815
Other alias-
HGNC (Hugo) C17orf102
LocusID (NCBI) 400591
Atlas_Id 60984
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 32901142 and ends at 32906388 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf102   34412
Cards
Entrez_Gene (NCBI)C17orf102  400591  chromosome 17 open reading frame 102
Aliases
GeneCards (Weizmann)C17orf102
Ensembl hg19 (Hinxton) [Gene_View]  chr17:32901142-32906388 [Contig_View]  C17orf102 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:32901142-32906388 [Contig_View]  C17orf102 [Vega]
TCGA cBioPortalC17orf102
AceView (NCBI)C17orf102
Genatlas (Paris)C17orf102
WikiGenes400591
SOURCE (Princeton)C17orf102
Genetics Home Reference (NIH)C17orf102
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf102  -     chr17:32901142-32906388 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf102  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblC17orf102 - 17q12 [CytoView hg19]  C17orf102 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIC17orf102 [Mapview hg19]  C17orf102 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK126768 BC133004 BC136710 BC142651 LN608645
RefSeq transcript (Entrez)NM_207454
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf102
Cluster EST : UnigeneHs.514090 [ NCBI ]
CGAP (NCI)Hs.514090
Gene ExpressionC17orf102 [ NCBI-GEO ]   C17orf102 [ EBI - ARRAY_EXPRESS ]   C17orf102 [ SEEK ]   C17orf102 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf102 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400591
GTEX Portal (Tissue expression)C17orf102
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RUQ5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RUQ5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RUQ5
Splice isoforms : SwissVarA2RUQ5
PhosPhoSitePlusA2RUQ5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf102
DMDM Disease mutations400591
Blocks (Seattle)C17orf102
SuperfamilyA2RUQ5
Peptide AtlasA2RUQ5
HPRD16975
IPIIPI00410523   
Protein Interaction databases
DIP (DOE-UCLA)A2RUQ5
IntAct (EBI)A2RUQ5
BioGRIDC17orf102
STRING (EMBL)C17orf102
ZODIACC17orf102
Ontologies - Pathways
QuickGOA2RUQ5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf102
Atlas of Cancer Signalling NetworkC17orf102
Wikipedia pathwaysC17orf102
Orthology - Evolution
OrthoDB400591
Phylogenetic Trees/Animal Genes : TreeFamC17orf102
HOVERGENA2RUQ5
HOGENOMA2RUQ5
Homologs : HomoloGeneC17orf102
Homology/Alignments : Family Browser (UCSC)C17orf102
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf102 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf102
dbVarC17orf102
ClinVarC17orf102
1000_GenomesC17orf102 
Exome Variant ServerC17orf102
ExAC (Exome Aggregation Consortium)C17orf102 (select the gene name)
Genetic variants : HAPMAP400591
Genomic Variants (DGV)C17orf102 [DGVbeta]
DECIPHER (Syndromes)17:32901142-32906388  
CONAN: Copy Number AnalysisC17orf102 
Mutations
ICGC Data PortalC17orf102 
TCGA Data PortalC17orf102 
Broad Tumor PortalC17orf102
OASIS PortalC17orf102 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf102  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf102
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf102
DgiDB (Drug Gene Interaction Database)C17orf102
DoCM (Curated mutations)C17orf102 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf102 (select a term)
intoGenC17orf102
Cancer3DC17orf102(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf102
Genetic Testing Registry C17orf102
NextProtA2RUQ5 [Medical]
TSGene400591
GENETestsC17orf102
Huge Navigator C17orf102 [HugePedia]
snp3D : Map Gene to Disease400591
BioCentury BCIQC17orf102
ClinGenC17orf102
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400591
Chemical/Pharm GKB GenePA164716932
Clinical trialC17orf102
Miscellaneous
canSAR (ICR)C17orf102 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf102
EVEXC17orf102
GoPubMedC17orf102
iHOPC17orf102
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:40 CET 2017

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