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C17orf104 (chromosome 17 open reading frame 104)

Identity

Other alias-
HGNC (Hugo) C17orf104
LocusID (NCBI) 284071
Atlas_Id 60985
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 42733762 and ends at 42753165 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf104   26670
Cards
Entrez_Gene (NCBI)C17orf104  284071  chromosome 17 open reading frame 104
Aliases
GeneCards (Weizmann)C17orf104
Ensembl hg19 (Hinxton)ENSG00000180336 [Gene_View]  chr17:42733762-42753165 [Contig_View]  C17orf104 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180336 [Gene_View]  chr17:42733762-42753165 [Contig_View]  C17orf104 [Vega]
ICGC DataPortalENSG00000180336
TCGA cBioPortalC17orf104
AceView (NCBI)C17orf104
Genatlas (Paris)C17orf104
WikiGenes284071
SOURCE (Princeton)C17orf104
Genetics Home Reference (NIH)C17orf104
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf104  -     chr17:42733762-42753165 +  17q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf104  -     17q21.31   [Description]    (hg38-Dec_2013)
EnsemblC17orf104 - 17q21.31 [CytoView hg19]  C17orf104 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIC17orf104 [Mapview hg19]  C17orf104 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA205120 AK093167 AK097747 AK302001 BC035159
RefSeq transcript (Entrez)NM_001033659 NM_001145080
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf104
Cluster EST : UnigeneHs.349758 [ NCBI ]
CGAP (NCI)Hs.349758
Alternative Splicing GalleryENSG00000180336
Gene ExpressionC17orf104 [ NCBI-GEO ]   C17orf104 [ EBI - ARRAY_EXPRESS ]   C17orf104 [ SEEK ]   C17orf104 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf104 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284071
GTEX Portal (Tissue expression)C17orf104
Protein : pattern, domain, 3D structure
UniProt/SwissProtA2RUB1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA2RUB1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA2RUB1
Splice isoforms : SwissVarA2RUB1
PhosPhoSitePlusA2RUB1
Domaine pattern : Prosite (Expaxy)PHOSPHOPANTETHEINE (PS00012)   
Domains : Interpro (EBI)DUF4582   
Domain families : Pfam (Sanger)DUF4582 (PF15189)   
Domain families : Pfam (NCBI)pfam15189   
Conserved Domain (NCBI)C17orf104
DMDM Disease mutations284071
Blocks (Seattle)C17orf104
SuperfamilyA2RUB1
Human Protein AtlasENSG00000180336
Peptide AtlasA2RUB1
HPRD18768
IPIIPI00744856   IPI00173449   IPI00917217   IPI00917572   IPI01011702   IPI00917822   
Protein Interaction databases
DIP (DOE-UCLA)A2RUB1
IntAct (EBI)A2RUB1
FunCoupENSG00000180336
BioGRIDC17orf104
STRING (EMBL)C17orf104
ZODIACC17orf104
Ontologies - Pathways
QuickGOA2RUB1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf104
Atlas of Cancer Signalling NetworkC17orf104
Wikipedia pathwaysC17orf104
Orthology - Evolution
OrthoDB284071
GeneTree (enSembl)ENSG00000180336
Phylogenetic Trees/Animal Genes : TreeFamC17orf104
HOVERGENA2RUB1
HOGENOMA2RUB1
Homologs : HomoloGeneC17orf104
Homology/Alignments : Family Browser (UCSC)C17orf104
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf104 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf104
dbVarC17orf104
ClinVarC17orf104
1000_GenomesC17orf104 
Exome Variant ServerC17orf104
ExAC (Exome Aggregation Consortium)C17orf104 (select the gene name)
Genetic variants : HAPMAP284071
Genomic Variants (DGV)C17orf104 [DGVbeta]
DECIPHER (Syndromes)17:42733762-42753165  ENSG00000180336
CONAN: Copy Number AnalysisC17orf104 
Mutations
ICGC Data PortalC17orf104 
TCGA Data PortalC17orf104 
Broad Tumor PortalC17orf104
OASIS PortalC17orf104 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf104  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf104
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf104
DgiDB (Drug Gene Interaction Database)C17orf104
DoCM (Curated mutations)C17orf104 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf104 (select a term)
intoGenC17orf104
Cancer3DC17orf104(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf104
Genetic Testing Registry C17orf104
NextProtA2RUB1 [Medical]
TSGene284071
GENETestsC17orf104
Huge Navigator C17orf104 [HugePedia]
snp3D : Map Gene to Disease284071
BioCentury BCIQC17orf104
ClinGenC17orf104
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284071
Chemical/Pharm GKB GenePA165431498
Clinical trialC17orf104
Miscellaneous
canSAR (ICR)C17orf104 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf104
EVEXC17orf104
GoPubMedC17orf104
iHOPC17orf104
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:40 CET 2017

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