Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf105 (chromosome 17 open reading frame 105)

Identity

Other alias-
HGNC (Hugo) C17orf105
LocusID (NCBI) 284067
Atlas_Id 60986
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43780435 and ends at 43784686 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf105   37241
Cards
Entrez_Gene (NCBI)C17orf105  284067  chromosome 17 open reading frame 105
Aliases
GeneCards (Weizmann)C17orf105
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:43780435-43784686 [Contig_View]  C17orf105 [Vega]
TCGA cBioPortalC17orf105
AceView (NCBI)C17orf105
Genatlas (Paris)C17orf105
WikiGenes284067
SOURCE (Princeton)C17orf105
Genetics Home Reference (NIH)C17orf105
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf105  -     chr17:43780435-43784686 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf105  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblC17orf105 - 17q21.31 [CytoView hg19]  C17orf105 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIC17orf105 [Mapview hg19]  C17orf105 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125817 BC054872 BC070324 BC146971
RefSeq transcript (Entrez)NM_001136483
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf105
Cluster EST : UnigeneHs.252707 [ NCBI ]
CGAP (NCI)Hs.252707
Gene ExpressionC17orf105 [ NCBI-GEO ]   C17orf105 [ EBI - ARRAY_EXPRESS ]   C17orf105 [ SEEK ]   C17orf105 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf105 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284067
GTEX Portal (Tissue expression)C17orf105
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RV13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RV13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RV13
Splice isoforms : SwissVarB2RV13
PhosPhoSitePlusB2RV13
Domains : Interpro (EBI)Hmw/KIAA1430   
Domain families : Pfam (Sanger)KIAA1430 (PF13879)   
Domain families : Pfam (NCBI)pfam13879   
Conserved Domain (NCBI)C17orf105
DMDM Disease mutations284067
Blocks (Seattle)C17orf105
SuperfamilyB2RV13
Peptide AtlasB2RV13
IPIIPI00173448   
Protein Interaction databases
DIP (DOE-UCLA)B2RV13
IntAct (EBI)B2RV13
BioGRIDC17orf105
STRING (EMBL)C17orf105
ZODIACC17orf105
Ontologies - Pathways
QuickGOB2RV13
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf105
Atlas of Cancer Signalling NetworkC17orf105
Wikipedia pathwaysC17orf105
Orthology - Evolution
OrthoDB284067
Phylogenetic Trees/Animal Genes : TreeFamC17orf105
HOVERGENB2RV13
HOGENOMB2RV13
Homologs : HomoloGeneC17orf105
Homology/Alignments : Family Browser (UCSC)C17orf105
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf105 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf105
dbVarC17orf105
ClinVarC17orf105
1000_GenomesC17orf105 
Exome Variant ServerC17orf105
ExAC (Exome Aggregation Consortium)C17orf105 (select the gene name)
Genetic variants : HAPMAP284067
Genomic Variants (DGV)C17orf105 [DGVbeta]
DECIPHERC17orf105 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf105 
Mutations
ICGC Data PortalC17orf105 
TCGA Data PortalC17orf105 
Broad Tumor PortalC17orf105
OASIS PortalC17orf105 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf105  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf105
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf105
DgiDB (Drug Gene Interaction Database)C17orf105
DoCM (Curated mutations)C17orf105 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf105 (select a term)
intoGenC17orf105
Cancer3DC17orf105(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf105
Genetic Testing Registry C17orf105
NextProtB2RV13 [Medical]
TSGene284067
GENETestsC17orf105
Target ValidationC17orf105
Huge Navigator C17orf105 [HugePedia]
snp3D : Map Gene to Disease284067
BioCentury BCIQC17orf105
ClinGenC17orf105
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284067
Chemical/Pharm GKB GenePA165431514
Clinical trialC17orf105
Miscellaneous
canSAR (ICR)C17orf105 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf105
EVEXC17orf105
GoPubMedC17orf105
iHOPC17orf105
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:10:38 CEST 2017

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