Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf107 (chromosome 17 open reading frame 107)

Identity

Other alias-
HGNC (Hugo) C17orf107
LocusID (NCBI) 100130311
Atlas_Id 60987
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4899653 and ends at 4902932 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf107   37238
Cards
Entrez_Gene (NCBI)C17orf107  100130311  chromosome 17 open reading frame 107
Aliases
GeneCards (Weizmann)C17orf107
Ensembl hg19 (Hinxton)ENSG00000205710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205710 [Gene_View]  chr17:4899653-4902932 [Contig_View]  C17orf107 [Vega]
ICGC DataPortalENSG00000205710
TCGA cBioPortalC17orf107
AceView (NCBI)C17orf107
Genatlas (Paris)C17orf107
WikiGenes100130311
SOURCE (Princeton)C17orf107
Genetics Home Reference (NIH)C17orf107
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf107  -     chr17:4899653-4902932 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf107  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblC17orf107 - 17p13.2 [CytoView hg19]  C17orf107 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIC17orf107 [Mapview hg19]  C17orf107 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128415 AK308530 AK309386 AW014012
RefSeq transcript (Entrez)NM_001145536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf107
Cluster EST : UnigeneHs.579243 [ NCBI ]
CGAP (NCI)Hs.579243
Alternative Splicing GalleryENSG00000205710
Gene ExpressionC17orf107 [ NCBI-GEO ]   C17orf107 [ EBI - ARRAY_EXPRESS ]   C17orf107 [ SEEK ]   C17orf107 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130311
GTEX Portal (Tissue expression)C17orf107
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZR85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZR85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZR85
Splice isoforms : SwissVarQ6ZR85
PhosPhoSitePlusQ6ZR85
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf107
DMDM Disease mutations100130311
Blocks (Seattle)C17orf107
SuperfamilyQ6ZR85
Human Protein AtlasENSG00000205710
Peptide AtlasQ6ZR85
IPIIPI00443662   IPI00974326   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZR85
IntAct (EBI)Q6ZR85
FunCoupENSG00000205710
BioGRIDC17orf107
STRING (EMBL)C17orf107
ZODIACC17orf107
Ontologies - Pathways
QuickGOQ6ZR85
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf107
Atlas of Cancer Signalling NetworkC17orf107
Wikipedia pathwaysC17orf107
Orthology - Evolution
OrthoDB100130311
GeneTree (enSembl)ENSG00000205710
Phylogenetic Trees/Animal Genes : TreeFamC17orf107
HOVERGENQ6ZR85
HOGENOMQ6ZR85
Homologs : HomoloGeneC17orf107
Homology/Alignments : Family Browser (UCSC)C17orf107
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf107
dbVarC17orf107
ClinVarC17orf107
1000_GenomesC17orf107 
Exome Variant ServerC17orf107
ExAC (Exome Aggregation Consortium)C17orf107 (select the gene name)
Genetic variants : HAPMAP100130311
Genomic Variants (DGV)C17orf107 [DGVbeta]
DECIPHERC17orf107 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf107 
Mutations
ICGC Data PortalC17orf107 
TCGA Data PortalC17orf107 
Broad Tumor PortalC17orf107
OASIS PortalC17orf107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf107  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf107
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf107
DgiDB (Drug Gene Interaction Database)C17orf107
DoCM (Curated mutations)C17orf107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf107 (select a term)
intoGenC17orf107
Cancer3DC17orf107(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf107
Genetic Testing Registry C17orf107
NextProtQ6ZR85 [Medical]
TSGene100130311
GENETestsC17orf107
Target ValidationC17orf107
Huge Navigator C17orf107 [HugePedia]
snp3D : Map Gene to Disease100130311
BioCentury BCIQC17orf107
ClinGenC17orf107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130311
Chemical/Pharm GKB GenePA165431617
Clinical trialC17orf107
Miscellaneous
canSAR (ICR)C17orf107 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf107
EVEXC17orf107
GoPubMedC17orf107
iHOPC17orf107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:32 CEST 2017

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