Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf112 (chromosome 17 open reading frame 112)

Identity

Other alias-
HGNC (Hugo) C17orf112
LocusID (NCBI) 100506650
Atlas_Id 60988
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 52985520 and ends at 52987652 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf112   42963
Cards
Entrez_Gene (NCBI)C17orf112  100506650  chromosome 17 open reading frame 112
Aliases
GeneCards (Weizmann)C17orf112
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:52985520-52987652 [Contig_View]  C17orf112 [Vega]
TCGA cBioPortalC17orf112
AceView (NCBI)C17orf112
Genatlas (Paris)C17orf112
WikiGenes100506650
SOURCE (Princeton)C17orf112
Genetics Home Reference (NIH)C17orf112
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf112  -     chr17:52985520-52987652 +  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf112  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblC17orf112 - 17q22 [CytoView hg19]  C17orf112 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIC17orf112 [Mapview hg19]  C17orf112 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI126620 BX103358
RefSeq transcript (Entrez)NM_001243552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf112
Cluster EST : UnigeneHs.146556 [ NCBI ]
CGAP (NCI)Hs.146556
Gene ExpressionC17orf112 [ NCBI-GEO ]   C17orf112 [ EBI - ARRAY_EXPRESS ]   C17orf112 [ SEEK ]   C17orf112 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf112 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506650
GTEX Portal (Tissue expression)C17orf112
Protein : pattern, domain, 3D structure
UniProt/SwissProtF2Z3M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtF2Z3M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProF2Z3M2
Splice isoforms : SwissVarF2Z3M2
PhosPhoSitePlusF2Z3M2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf112
DMDM Disease mutations100506650
Blocks (Seattle)C17orf112
SuperfamilyF2Z3M2
Peptide AtlasF2Z3M2
Protein Interaction databases
DIP (DOE-UCLA)F2Z3M2
IntAct (EBI)F2Z3M2
BioGRIDC17orf112
STRING (EMBL)C17orf112
ZODIACC17orf112
Ontologies - Pathways
QuickGOF2Z3M2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf112
Atlas of Cancer Signalling NetworkC17orf112
Wikipedia pathwaysC17orf112
Orthology - Evolution
OrthoDB100506650
Phylogenetic Trees/Animal Genes : TreeFamC17orf112
HOVERGENF2Z3M2
HOGENOMF2Z3M2
Homologs : HomoloGeneC17orf112
Homology/Alignments : Family Browser (UCSC)C17orf112
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf112
dbVarC17orf112
ClinVarC17orf112
1000_GenomesC17orf112 
Exome Variant ServerC17orf112
ExAC (Exome Aggregation Consortium)C17orf112 (select the gene name)
Genetic variants : HAPMAP100506650
Genomic Variants (DGV)C17orf112 [DGVbeta]
DECIPHERC17orf112 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf112 
Mutations
ICGC Data PortalC17orf112 
TCGA Data PortalC17orf112 
Broad Tumor PortalC17orf112
OASIS PortalC17orf112 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC17orf112
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf112
DgiDB (Drug Gene Interaction Database)C17orf112
DoCM (Curated mutations)C17orf112 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf112 (select a term)
intoGenC17orf112
Cancer3DC17orf112(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf112
Genetic Testing Registry C17orf112
NextProtF2Z3M2 [Medical]
TSGene100506650
GENETestsC17orf112
Target ValidationC17orf112
Huge Navigator C17orf112 [HugePedia]
snp3D : Map Gene to Disease100506650
BioCentury BCIQC17orf112
ClinGenC17orf112
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506650
Chemical/Pharm GKB GenePA166049091
Clinical trialC17orf112
Miscellaneous
canSAR (ICR)C17orf112 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf112
EVEXC17orf112
GoPubMedC17orf112
iHOPC17orf112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:33 CEST 2017

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