Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C17orf47 (chromosome 17 open reading frame 47)

Identity

Alias_symbol (synonym)FLJ40121
Other alias-
HGNC (Hugo) C17orf47
LocusID (NCBI) 284083
Atlas_Id 60989
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 58541587 and ends at 58544372 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf47   26844
Cards
Entrez_Gene (NCBI)C17orf47  284083  chromosome 17 open reading frame 47
Aliases
GeneCards (Weizmann)C17orf47
Ensembl hg19 (Hinxton)ENSG00000181013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181013 [Gene_View]  chr17:58541587-58544372 [Contig_View]  C17orf47 [Vega]
ICGC DataPortalENSG00000181013
TCGA cBioPortalC17orf47
AceView (NCBI)C17orf47
Genatlas (Paris)C17orf47
WikiGenes284083
SOURCE (Princeton)C17orf47
Genetics Home Reference (NIH)C17orf47
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf47  -     chr17:58541587-58544372 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf47  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblC17orf47 - 17q22 [CytoView hg19]  C17orf47 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIC17orf47 [Mapview hg19]  C17orf47 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097440 BC022189 DB073141
RefSeq transcript (Entrez)NM_001038704
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf47
Cluster EST : UnigeneHs.646574 [ NCBI ]
CGAP (NCI)Hs.646574
Alternative Splicing GalleryENSG00000181013
Gene ExpressionC17orf47 [ NCBI-GEO ]   C17orf47 [ EBI - ARRAY_EXPRESS ]   C17orf47 [ SEEK ]   C17orf47 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf47 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284083
GTEX Portal (Tissue expression)C17orf47
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEP4
Splice isoforms : SwissVarQ8NEP4
PhosPhoSitePlusQ8NEP4
Domains : Interpro (EBI)DUF4655   
Domain families : Pfam (Sanger)DUF4655 (PF15548)   
Domain families : Pfam (NCBI)pfam15548   
Conserved Domain (NCBI)C17orf47
DMDM Disease mutations284083
Blocks (Seattle)C17orf47
SuperfamilyQ8NEP4
Human Protein AtlasENSG00000181013
Peptide AtlasQ8NEP4
HPRD08269
IPIIPI00182427   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEP4
IntAct (EBI)Q8NEP4
FunCoupENSG00000181013
BioGRIDC17orf47
STRING (EMBL)C17orf47
ZODIACC17orf47
Ontologies - Pathways
QuickGOQ8NEP4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf47
Atlas of Cancer Signalling NetworkC17orf47
Wikipedia pathwaysC17orf47
Orthology - Evolution
OrthoDB284083
GeneTree (enSembl)ENSG00000181013
Phylogenetic Trees/Animal Genes : TreeFamC17orf47
HOVERGENQ8NEP4
HOGENOMQ8NEP4
Homologs : HomoloGeneC17orf47
Homology/Alignments : Family Browser (UCSC)C17orf47
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf47 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf47
dbVarC17orf47
ClinVarC17orf47
1000_GenomesC17orf47 
Exome Variant ServerC17orf47
ExAC (Exome Aggregation Consortium)C17orf47 (select the gene name)
Genetic variants : HAPMAP284083
Genomic Variants (DGV)C17orf47 [DGVbeta]
DECIPHERC17orf47 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf47 
Mutations
ICGC Data PortalC17orf47 
TCGA Data PortalC17orf47 
Broad Tumor PortalC17orf47
OASIS PortalC17orf47 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf47  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf47
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf47
DgiDB (Drug Gene Interaction Database)C17orf47
DoCM (Curated mutations)C17orf47 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf47 (select a term)
intoGenC17orf47
Cancer3DC17orf47(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf47
Genetic Testing Registry C17orf47
NextProtQ8NEP4 [Medical]
TSGene284083
GENETestsC17orf47
Target ValidationC17orf47
Huge Navigator C17orf47 [HugePedia]
snp3D : Map Gene to Disease284083
BioCentury BCIQC17orf47
ClinGenC17orf47
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284083
Chemical/Pharm GKB GenePA142672230
Clinical trialC17orf47
Miscellaneous
canSAR (ICR)C17orf47 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf47
EVEXC17orf47
GoPubMedC17orf47
iHOPC17orf47
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:40:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.