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C17orf50 (chromosome 17 open reading frame 50)

Identity

Other alias-
HGNC (Hugo) C17orf50
LocusID (NCBI) 146853
Atlas_Id 60991
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35760897 and ends at 35765079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf50   29581
Cards
Entrez_Gene (NCBI)C17orf50  146853  chromosome 17 open reading frame 50
Aliases
GeneCards (Weizmann)C17orf50
Ensembl hg19 (Hinxton)ENSG00000270806 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270806 [Gene_View]  chr17:35760897-35765079 [Contig_View]  C17orf50 [Vega]
ICGC DataPortalENSG00000270806
TCGA cBioPortalC17orf50
AceView (NCBI)C17orf50
Genatlas (Paris)C17orf50
WikiGenes146853
SOURCE (Princeton)C17orf50
Genetics Home Reference (NIH)C17orf50
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf50  -     chr17:35760897-35765079 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf50  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblC17orf50 - 17q12 [CytoView hg19]  C17orf50 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIC17orf50 [Mapview hg19]  C17orf50 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI004987 AY557347 BC021727 BC156774 DB452451
RefSeq transcript (Entrez)NM_145272
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf50
Cluster EST : UnigeneHs.127194 [ NCBI ]
CGAP (NCI)Hs.127194
Alternative Splicing GalleryENSG00000270806
Gene ExpressionC17orf50 [ NCBI-GEO ]   C17orf50 [ EBI - ARRAY_EXPRESS ]   C17orf50 [ SEEK ]   C17orf50 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf50 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146853
GTEX Portal (Tissue expression)C17orf50
Human Protein AtlasENSG00000270806-C17orf50 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW18
Splice isoforms : SwissVarQ8WW18
PhosPhoSitePlusQ8WW18
Domains : Interpro (EBI)DUF4637   
Domain families : Pfam (Sanger)DUF4637 (PF15470)   
Domain families : Pfam (NCBI)pfam15470   
Conserved Domain (NCBI)C17orf50
DMDM Disease mutations146853
Blocks (Seattle)C17orf50
SuperfamilyQ8WW18
Human Protein Atlas [tissue]ENSG00000270806-C17orf50 [tissue]
Peptide AtlasQ8WW18
HPRD11239
IPIIPI00103196   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW18
IntAct (EBI)Q8WW18
FunCoupENSG00000270806
BioGRIDC17orf50
STRING (EMBL)C17orf50
ZODIACC17orf50
Ontologies - Pathways
QuickGOQ8WW18
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf50
Atlas of Cancer Signalling NetworkC17orf50
Wikipedia pathwaysC17orf50
Orthology - Evolution
OrthoDB146853
GeneTree (enSembl)ENSG00000270806
Phylogenetic Trees/Animal Genes : TreeFamC17orf50
HOVERGENQ8WW18
HOGENOMQ8WW18
Homologs : HomoloGeneC17orf50
Homology/Alignments : Family Browser (UCSC)C17orf50
Gene fusions - Rearrangements
Tumor Fusion PortalC17orf50
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf50 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf50
dbVarC17orf50
ClinVarC17orf50
1000_GenomesC17orf50 
Exome Variant ServerC17orf50
ExAC (Exome Aggregation Consortium)ENSG00000270806
GNOMAD BrowserENSG00000270806
Genetic variants : HAPMAP146853
Genomic Variants (DGV)C17orf50 [DGVbeta]
DECIPHERC17orf50 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf50 
Mutations
ICGC Data PortalC17orf50 
TCGA Data PortalC17orf50 
Broad Tumor PortalC17orf50
OASIS PortalC17orf50 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC17orf50
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf50
DgiDB (Drug Gene Interaction Database)C17orf50
DoCM (Curated mutations)C17orf50 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf50 (select a term)
intoGenC17orf50
Cancer3DC17orf50(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC17orf50
MedgenC17orf50
Genetic Testing Registry C17orf50
NextProtQ8WW18 [Medical]
TSGene146853
GENETestsC17orf50
Target ValidationC17orf50
Huge Navigator C17orf50 [HugePedia]
snp3D : Map Gene to Disease146853
BioCentury BCIQC17orf50
ClinGenC17orf50
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146853
Chemical/Pharm GKB GenePA142672233
Clinical trialC17orf50
Miscellaneous
canSAR (ICR)C17orf50 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf50
EVEXC17orf50
GoPubMedC17orf50
iHOPC17orf50
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:59 CET 2017

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