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C17orf51 (chromosome 17 open reading frame 51)

Identity

Alias_symbol (synonym)FLJ12977
FLJ31874
FLJ33618
Other alias-
HGNC (Hugo) C17orf51
LocusID (NCBI) 339263
Atlas_Id 60992
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 21431571 and ends at 21454941 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNG4 (17q24.2) / C17orf51 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf51   27904
Cards
Entrez_Gene (NCBI)C17orf51  339263  chromosome 17 open reading frame 51
Aliases
GeneCards (Weizmann)C17orf51
Ensembl hg19 (Hinxton)ENSG00000212719 [Gene_View]  chr17:21431571-21454941 [Contig_View]  C17orf51 [Vega]
Ensembl hg38 (Hinxton)ENSG00000212719 [Gene_View]  chr17:21431571-21454941 [Contig_View]  C17orf51 [Vega]
ICGC DataPortalENSG00000212719
TCGA cBioPortalC17orf51
AceView (NCBI)C17orf51
Genatlas (Paris)C17orf51
WikiGenes339263
SOURCE (Princeton)C17orf51
Genetics Home Reference (NIH)C17orf51
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf51  -     chr17:21431571-21454941 -  17p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf51  -     17p11.2   [Description]    (hg38-Dec_2013)
EnsemblC17orf51 - 17p11.2 [CytoView hg19]  C17orf51 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIC17orf51 [Mapview hg19]  C17orf51 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023039 AK056436 AK090937 AK096256 AK123143
RefSeq transcript (Entrez)NM_001113434
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)C17orf51
Cluster EST : UnigeneHs.745165 [ NCBI ]
CGAP (NCI)Hs.745165
Alternative Splicing GalleryENSG00000212719
Gene ExpressionC17orf51 [ NCBI-GEO ]   C17orf51 [ EBI - ARRAY_EXPRESS ]   C17orf51 [ SEEK ]   C17orf51 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf51 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339263
GTEX Portal (Tissue expression)C17orf51
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MQB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MQB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MQB3
Splice isoforms : SwissVarA8MQB3
PhosPhoSitePlusA8MQB3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf51
DMDM Disease mutations339263
Blocks (Seattle)C17orf51
SuperfamilyA8MQB3
Human Protein AtlasENSG00000212719
Peptide AtlasA8MQB3
IPIIPI00792572   IPI00719272   IPI01011185   
Protein Interaction databases
DIP (DOE-UCLA)A8MQB3
IntAct (EBI)A8MQB3
FunCoupENSG00000212719
BioGRIDC17orf51
STRING (EMBL)C17orf51
ZODIACC17orf51
Ontologies - Pathways
QuickGOA8MQB3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf51
Atlas of Cancer Signalling NetworkC17orf51
Wikipedia pathwaysC17orf51
Orthology - Evolution
OrthoDB339263
GeneTree (enSembl)ENSG00000212719
Phylogenetic Trees/Animal Genes : TreeFamC17orf51
HOVERGENA8MQB3
HOGENOMA8MQB3
Homologs : HomoloGeneC17orf51
Homology/Alignments : Family Browser (UCSC)C17orf51
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf51
dbVarC17orf51
ClinVarC17orf51
1000_GenomesC17orf51 
Exome Variant ServerC17orf51
ExAC (Exome Aggregation Consortium)C17orf51 (select the gene name)
Genetic variants : HAPMAP339263
Genomic Variants (DGV)C17orf51 [DGVbeta]
DECIPHER (Syndromes)17:21431571-21454941  ENSG00000212719
CONAN: Copy Number AnalysisC17orf51 
Mutations
ICGC Data PortalC17orf51 
TCGA Data PortalC17orf51 
Broad Tumor PortalC17orf51
OASIS PortalC17orf51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf51  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf51
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf51
DgiDB (Drug Gene Interaction Database)C17orf51
DoCM (Curated mutations)C17orf51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf51 (select a term)
intoGenC17orf51
Cancer3DC17orf51(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf51
Genetic Testing Registry C17orf51
NextProtA8MQB3 [Medical]
TSGene339263
GENETestsC17orf51
Huge Navigator C17orf51 [HugePedia]
snp3D : Map Gene to Disease339263
BioCentury BCIQC17orf51
ClinGenC17orf51
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339263
Chemical/Pharm GKB GenePA142672234
Clinical trialC17orf51
Miscellaneous
canSAR (ICR)C17orf51 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf51
EVEXC17orf51
GoPubMedC17orf51
iHOPC17orf51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:42 CET 2017

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