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C17orf58 (chromosome 17 open reading frame 58)

Identity

Other alias-
HGNC (Hugo) C17orf58
LocusID (NCBI) 284018
Atlas_Id 60994
Location 17q24.2  [Link to chromosome band 17q24]
Location_base_pair Starts at 67991099 and ends at 67993649 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf58   27568
Cards
Entrez_Gene (NCBI)C17orf58  284018  chromosome 17 open reading frame 58
Aliases
GeneCards (Weizmann)C17orf58
Ensembl hg19 (Hinxton)ENSG00000186665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186665 [Gene_View]  chr17:67991099-67993649 [Contig_View]  C17orf58 [Vega]
ICGC DataPortalENSG00000186665
TCGA cBioPortalC17orf58
AceView (NCBI)C17orf58
Genatlas (Paris)C17orf58
WikiGenes284018
SOURCE (Princeton)C17orf58
Genetics Home Reference (NIH)C17orf58
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf58  -     chr17:67991099-67993649 -  17q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf58  -     17q24.2   [Description]    (hg19-Feb_2009)
EnsemblC17orf58 - 17q24.2 [CytoView hg19]  C17orf58 - 17q24.2 [CytoView hg38]
Mapping of homologs : NCBIC17orf58 [Mapview hg19]  C17orf58 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI126153 AK026583 BC021702 BC036760 BC105124
RefSeq transcript (Entrez)NM_181655 NM_181656
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf58
Cluster EST : UnigeneHs.90790 [ NCBI ]
CGAP (NCI)Hs.90790
Alternative Splicing GalleryENSG00000186665
Gene ExpressionC17orf58 [ NCBI-GEO ]   C17orf58 [ EBI - ARRAY_EXPRESS ]   C17orf58 [ SEEK ]   C17orf58 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf58 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284018
GTEX Portal (Tissue expression)C17orf58
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2W7
Splice isoforms : SwissVarQ2M2W7
PhosPhoSitePlusQ2M2W7
Domains : Interpro (EBI)TIMP-like_OB-fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf58
DMDM Disease mutations284018
Blocks (Seattle)C17orf58
SuperfamilyQ2M2W7
Human Protein AtlasENSG00000186665
Peptide AtlasQ2M2W7
HPRD14151
IPIIPI00376969   IPI00376970   
Protein Interaction databases
DIP (DOE-UCLA)Q2M2W7
IntAct (EBI)Q2M2W7
FunCoupENSG00000186665
BioGRIDC17orf58
STRING (EMBL)C17orf58
ZODIACC17orf58
Ontologies - Pathways
QuickGOQ2M2W7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf58
Atlas of Cancer Signalling NetworkC17orf58
Wikipedia pathwaysC17orf58
Orthology - Evolution
OrthoDB284018
GeneTree (enSembl)ENSG00000186665
Phylogenetic Trees/Animal Genes : TreeFamC17orf58
HOVERGENQ2M2W7
HOGENOMQ2M2W7
Homologs : HomoloGeneC17orf58
Homology/Alignments : Family Browser (UCSC)C17orf58
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf58 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf58
dbVarC17orf58
ClinVarC17orf58
1000_GenomesC17orf58 
Exome Variant ServerC17orf58
ExAC (Exome Aggregation Consortium)C17orf58 (select the gene name)
Genetic variants : HAPMAP284018
Genomic Variants (DGV)C17orf58 [DGVbeta]
DECIPHERC17orf58 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf58 
Mutations
ICGC Data PortalC17orf58 
TCGA Data PortalC17orf58 
Broad Tumor PortalC17orf58
OASIS PortalC17orf58 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf58  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf58
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf58
DgiDB (Drug Gene Interaction Database)C17orf58
DoCM (Curated mutations)C17orf58 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf58 (select a term)
intoGenC17orf58
Cancer3DC17orf58(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf58
Genetic Testing Registry C17orf58
NextProtQ2M2W7 [Medical]
TSGene284018
GENETestsC17orf58
Target ValidationC17orf58
Huge Navigator C17orf58 [HugePedia]
snp3D : Map Gene to Disease284018
BioCentury BCIQC17orf58
ClinGenC17orf58
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284018
Chemical/Pharm GKB GenePA142672241
Clinical trialC17orf58
Miscellaneous
canSAR (ICR)C17orf58 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf58
EVEXC17orf58
GoPubMedC17orf58
iHOPC17orf58
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:54 CEST 2017

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