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C17orf59 (chromosome 17 open reading frame 59)

Identity

Other aliasPRO2472
HGNC (Hugo) C17orf59
LocusID (NCBI) 54785
Atlas_Id 60995
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8091651 and ends at 8093564 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf59   25939
Cards
Entrez_Gene (NCBI)C17orf59  54785  chromosome 17 open reading frame 59
AliasesPRO2472
GeneCards (Weizmann)C17orf59
Ensembl hg19 (Hinxton) [Gene_View]  chr17:8091651-8093564 [Contig_View]  C17orf59 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:8091651-8093564 [Contig_View]  C17orf59 [Vega]
TCGA cBioPortalC17orf59
AceView (NCBI)C17orf59
Genatlas (Paris)C17orf59
WikiGenes54785
SOURCE (Princeton)C17orf59
Genetics Home Reference (NIH)C17orf59
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf59  -     chr17:8091651-8093564 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf59  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblC17orf59 - 17p13.1 [CytoView hg19]  C17orf59 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIC17orf59 [Mapview hg19]  C17orf59 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI174760 AK000021 AK222506 BC009261 BC018880
RefSeq transcript (Entrez)NM_017622
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)C17orf59
Cluster EST : UnigeneHs.129563 [ NCBI ]
CGAP (NCI)Hs.129563
Gene ExpressionC17orf59 [ NCBI-GEO ]   C17orf59 [ EBI - ARRAY_EXPRESS ]   C17orf59 [ SEEK ]   C17orf59 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf59 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54785
GTEX Portal (Tissue expression)C17orf59
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GS4
Splice isoforms : SwissVarQ96GS4
PhosPhoSitePlusQ96GS4
Domains : Interpro (EBI)DUF2365   
Domain families : Pfam (Sanger)DUF2365 (PF10157)   
Domain families : Pfam (NCBI)pfam10157   
Conserved Domain (NCBI)C17orf59
DMDM Disease mutations54785
Blocks (Seattle)C17orf59
SuperfamilyQ96GS4
Peptide AtlasQ96GS4
HPRD13368
IPIIPI00329748   IPI00009490   
Protein Interaction databases
DIP (DOE-UCLA)Q96GS4
IntAct (EBI)Q96GS4
BioGRIDC17orf59
STRING (EMBL)C17orf59
ZODIACC17orf59
Ontologies - Pathways
QuickGOQ96GS4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC17orf59
Atlas of Cancer Signalling NetworkC17orf59
Wikipedia pathwaysC17orf59
Orthology - Evolution
OrthoDB54785
Phylogenetic Trees/Animal Genes : TreeFamC17orf59
HOVERGENQ96GS4
HOGENOMQ96GS4
Homologs : HomoloGeneC17orf59
Homology/Alignments : Family Browser (UCSC)C17orf59
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf59 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf59
dbVarC17orf59
ClinVarC17orf59
1000_GenomesC17orf59 
Exome Variant ServerC17orf59
ExAC (Exome Aggregation Consortium)C17orf59 (select the gene name)
Genetic variants : HAPMAP54785
Genomic Variants (DGV)C17orf59 [DGVbeta]
DECIPHER (Syndromes)17:8091651-8093564  
CONAN: Copy Number AnalysisC17orf59 
Mutations
ICGC Data PortalC17orf59 
TCGA Data PortalC17orf59 
Broad Tumor PortalC17orf59
OASIS PortalC17orf59 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf59  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf59
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf59
DgiDB (Drug Gene Interaction Database)C17orf59
DoCM (Curated mutations)C17orf59 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf59 (select a term)
intoGenC17orf59
Cancer3DC17orf59(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf59
Genetic Testing Registry C17orf59
NextProtQ96GS4 [Medical]
TSGene54785
GENETestsC17orf59
Huge Navigator C17orf59 [HugePedia]
snp3D : Map Gene to Disease54785
BioCentury BCIQC17orf59
ClinGenC17orf59
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54785
Chemical/Pharm GKB GenePA142672242
Clinical trialC17orf59
Miscellaneous
canSAR (ICR)C17orf59 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf59
EVEXC17orf59
GoPubMedC17orf59
iHOPC17orf59
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:43 CET 2017

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