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C17orf62 (chromosome 17 open reading frame 62)

Identity

Alias_symbol (synonym)MGC4368
FLJ90469
Other alias-
HGNC (Hugo) C17orf62
LocusID (NCBI) 79415
Atlas_Id 60996
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 80400463 and ends at 80408707 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C17orf62 (17q25.3) / ENTPD4 (8p21.3)HEXDC (17q25.3) / C17orf62 (17q25.3)WDR45B (17q25.3) / C17orf62 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf62   28672
Cards
Entrez_Gene (NCBI)C17orf62  79415  chromosome 17 open reading frame 62
Aliases
GeneCards (Weizmann)C17orf62
Ensembl hg19 (Hinxton)ENSG00000178927 [Gene_View]  chr17:80400463-80408707 [Contig_View]  C17orf62 [Vega]
Ensembl hg38 (Hinxton)ENSG00000178927 [Gene_View]  chr17:80400463-80408707 [Contig_View]  C17orf62 [Vega]
ICGC DataPortalENSG00000178927
TCGA cBioPortalC17orf62
AceView (NCBI)C17orf62
Genatlas (Paris)C17orf62
WikiGenes79415
SOURCE (Princeton)C17orf62
Genetics Home Reference (NIH)C17orf62
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf62  -     chr17:80400463-80408707 -  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf62  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblC17orf62 - 17q25.3 [CytoView hg19]  C17orf62 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIC17orf62 [Mapview hg19]  C17orf62 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF269290 AK027743 AK054876 AK056342 AK074950
RefSeq transcript (Entrez)NM_001033046 NM_001100407 NM_001100408 NM_001193653 NM_001193654 NM_001193655 NM_001193657
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010663 NW_004929408
Consensus coding sequences : CCDS (NCBI)C17orf62
Cluster EST : UnigeneHs.163113 [ NCBI ]
CGAP (NCI)Hs.163113
Alternative Splicing GalleryENSG00000178927
Gene ExpressionC17orf62 [ NCBI-GEO ]   C17orf62 [ EBI - ARRAY_EXPRESS ]   C17orf62 [ SEEK ]   C17orf62 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79415
GTEX Portal (Tissue expression)C17orf62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQA9
Splice isoforms : SwissVarQ9BQA9
PhosPhoSitePlusQ9BQA9
Domains : Interpro (EBI)DUF4564   
Domain families : Pfam (Sanger)DUF4564 (PF15169)   
Domain families : Pfam (NCBI)pfam15169   
Conserved Domain (NCBI)C17orf62
DMDM Disease mutations79415
Blocks (Seattle)C17orf62
SuperfamilyQ9BQA9
Human Protein AtlasENSG00000178927
Peptide AtlasQ9BQA9
HPRD14630
IPIIPI00001578   IPI00412066   IPI01014178   IPI00983175   IPI00382518   IPI00795592   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQA9
IntAct (EBI)Q9BQA9
FunCoupENSG00000178927
BioGRIDC17orf62
STRING (EMBL)C17orf62
ZODIACC17orf62
Ontologies - Pathways
QuickGOQ9BQA9
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkC17orf62
Atlas of Cancer Signalling NetworkC17orf62
Wikipedia pathwaysC17orf62
Orthology - Evolution
OrthoDB79415
GeneTree (enSembl)ENSG00000178927
Phylogenetic Trees/Animal Genes : TreeFamC17orf62
HOVERGENQ9BQA9
HOGENOMQ9BQA9
Homologs : HomoloGeneC17orf62
Homology/Alignments : Family Browser (UCSC)C17orf62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf62
dbVarC17orf62
ClinVarC17orf62
1000_GenomesC17orf62 
Exome Variant ServerC17orf62
ExAC (Exome Aggregation Consortium)C17orf62 (select the gene name)
Genetic variants : HAPMAP79415
Genomic Variants (DGV)C17orf62 [DGVbeta]
DECIPHER (Syndromes)17:80400463-80408707  ENSG00000178927
CONAN: Copy Number AnalysisC17orf62 
Mutations
ICGC Data PortalC17orf62 
TCGA Data PortalC17orf62 
Broad Tumor PortalC17orf62
OASIS PortalC17orf62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf62
DgiDB (Drug Gene Interaction Database)C17orf62
DoCM (Curated mutations)C17orf62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf62 (select a term)
intoGenC17orf62
Cancer3DC17orf62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf62
Genetic Testing Registry C17orf62
NextProtQ9BQA9 [Medical]
TSGene79415
GENETestsC17orf62
Huge Navigator C17orf62 [HugePedia]
snp3D : Map Gene to Disease79415
BioCentury BCIQC17orf62
ClinGenC17orf62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79415
Chemical/Pharm GKB GenePA142672245
Clinical trialC17orf62
Miscellaneous
canSAR (ICR)C17orf62 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf62
EVEXC17orf62
GoPubMedC17orf62
iHOPC17orf62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:43 CET 2017

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