Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C17orf64 (chromosome 17 open reading frame 64)

Identity

Other alias-
HGNC (Hugo) C17orf64
LocusID (NCBI) 124773
Atlas_Id 60997
Location 17q23.2  [Link to chromosome band 17q23]
Location_base_pair Starts at 60422504 and ends at 60431426 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HEATR6 (17q23.1) / C17orf64 (17q23.2)LUC7L3 (17q21.33) / C17orf64 (17q23.2)PPM1D (17q23.2) / C17orf64 (17q23.2)
TOP1 (20q12) / C17orf64 (17q23.2)HEATR6 C17orf64LUC7L3 C17orf64
TOP1 C17orf64

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(17;17)(q21;q23) LUC7L3/C17orf64
HEATR6/C17orf64 (17q23)
t(17;20)(q23;q12) TOP1/C17orf64

External links

Nomenclature
HGNC (Hugo)C17orf64   26990
Cards
Entrez_Gene (NCBI)C17orf64  124773  chromosome 17 open reading frame 64
Aliases
GeneCards (Weizmann)C17orf64
Ensembl hg19 (Hinxton)ENSG00000141371 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141371 [Gene_View]  ENSG00000141371 [Sequence]  chr17:60422504-60431426 [Contig_View]  C17orf64 [Vega]
ICGC DataPortalENSG00000141371
TCGA cBioPortalC17orf64
AceView (NCBI)C17orf64
Genatlas (Paris)C17orf64
WikiGenes124773
SOURCE (Princeton)C17orf64
Genetics Home Reference (NIH)C17orf64
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf64  -     chr17:60422504-60431426 +  17q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf64  -     17q23.2   [Description]    (hg19-Feb_2009)
GoldenPathC17orf64 - 17q23.2 [CytoView hg19]  C17orf64 - 17q23.2 [CytoView hg38]
ImmunoBaseENSG00000141371
genome Data Viewer NCBIC17orf64 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC036356 BC048806 CD742737 DB448877
RefSeq transcript (Entrez)NM_181707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf64
Alternative Splicing GalleryENSG00000141371
Gene ExpressionC17orf64 [ NCBI-GEO ]   C17orf64 [ EBI - ARRAY_EXPRESS ]   C17orf64 [ SEEK ]   C17orf64 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf64 [ Firebrowse - Broad ]
GenevisibleExpression of C17orf64 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124773
GTEX Portal (Tissue expression)C17orf64
Human Protein AtlasENSG00000141371-C17orf64 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WR6
Splice isoforms : SwissVarQ86WR6
PhosPhoSitePlusQ86WR6
Domains : Interpro (EBI)C17orf64-like    DUF4208   
Domain families : Pfam (Sanger)DUF4208 (PF13907)   
Domain families : Pfam (NCBI)pfam13907   
Domain families : Smart (EMBL)DUF4208 (SM01176)  
Conserved Domain (NCBI)C17orf64
DMDM Disease mutations124773
Blocks (Seattle)C17orf64
SuperfamilyQ86WR6
Human Protein Atlas [tissue]ENSG00000141371-C17orf64 [tissue]
Peptide AtlasQ86WR6
HPRD14029
IPIIPI00217694   IPI00925435   
Protein Interaction databases
DIP (DOE-UCLA)Q86WR6
IntAct (EBI)Q86WR6
FunCoupENSG00000141371
BioGRIDC17orf64
STRING (EMBL)C17orf64
ZODIACC17orf64
Ontologies - Pathways
QuickGOQ86WR6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC17orf64
Atlas of Cancer Signalling NetworkC17orf64
Wikipedia pathwaysC17orf64
Orthology - Evolution
OrthoDB124773
GeneTree (enSembl)ENSG00000141371
Phylogenetic Trees/Animal Genes : TreeFamC17orf64
HOGENOMQ86WR6
Homologs : HomoloGeneC17orf64
Homology/Alignments : Family Browser (UCSC)C17orf64
Gene fusions - Rearrangements
Fusion PortalHEATR6 C17orf64
Fusion PortalLUC7L3 C17orf64
Fusion PortalTOP1 C17orf64
Fusion : QuiverC17orf64
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf64
dbVarC17orf64
ClinVarC17orf64
1000_GenomesC17orf64 
Exome Variant ServerC17orf64
GNOMAD BrowserENSG00000141371
Varsome BrowserC17orf64
Genetic variants : HAPMAP124773
Genomic Variants (DGV)C17orf64 [DGVbeta]
DECIPHERC17orf64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf64 
Mutations
ICGC Data PortalC17orf64 
TCGA Data PortalC17orf64 
Broad Tumor PortalC17orf64
OASIS PortalC17orf64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf64  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC17orf64
Mutations and Diseases : HGMDC17orf64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf64
DgiDB (Drug Gene Interaction Database)C17orf64
DoCM (Curated mutations)C17orf64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf64 (select a term)
intoGenC17orf64
Cancer3DC17orf64(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC17orf64
MedgenC17orf64
Genetic Testing Registry C17orf64
NextProtQ86WR6 [Medical]
TSGene124773
GENETestsC17orf64
Target ValidationC17orf64
Huge Navigator C17orf64 [HugePedia]
snp3D : Map Gene to Disease124773
BioCentury BCIQC17orf64
ClinGenC17orf64
Clinical trials, drugs, therapy
Protein Interactions : CTD124773
Pharm GKB GenePA142672247
Clinical trialC17orf64
Miscellaneous
canSAR (ICR)C17orf64 (select the gene name)
HarmonizomeC17orf64
DataMed IndexC17orf64
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf64
EVEXC17orf64
GoPubMedC17orf64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 10 19:55:54 CEST 2020
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