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C17orf67 (chromosome 17 open reading frame 67)

Identity

Other alias-
HGNC (Hugo) C17orf67
LocusID (NCBI) 339210
Atlas_Id 60998
Location 17q22  [Link to chromosome band 17q22]
Location_base_pair Starts at 56791913 and ends at 56833895 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AKAP1 (17q22) / C17orf67 (17q22)C17orf67 (17q22) / C17orf67 (17q22)C17orf67 (17q22) / ITFG1 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf67   27900
Cards
Entrez_Gene (NCBI)C17orf67  339210  chromosome 17 open reading frame 67
Aliases
GeneCards (Weizmann)C17orf67
Ensembl hg19 (Hinxton)ENSG00000214226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214226 [Gene_View]  chr17:56791913-56833895 [Contig_View]  C17orf67 [Vega]
ICGC DataPortalENSG00000214226
TCGA cBioPortalC17orf67
AceView (NCBI)C17orf67
Genatlas (Paris)C17orf67
WikiGenes339210
SOURCE (Princeton)C17orf67
Genetics Home Reference (NIH)C17orf67
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf67  -     chr17:56791913-56833895 -  17q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf67  -     17q22   [Description]    (hg19-Feb_2009)
EnsemblC17orf67 - 17q22 [CytoView hg19]  C17orf67 - 17q22 [CytoView hg38]
Mapping of homologs : NCBIC17orf67 [Mapview hg19]  C17orf67 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC041467 BC093905 BC093907 BU075516 CA308560
RefSeq transcript (Entrez)NM_001085430
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf67
Cluster EST : UnigeneHs.658949 [ NCBI ]
CGAP (NCI)Hs.658949
Alternative Splicing GalleryENSG00000214226
Gene ExpressionC17orf67 [ NCBI-GEO ]   C17orf67 [ EBI - ARRAY_EXPRESS ]   C17orf67 [ SEEK ]   C17orf67 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf67 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339210
GTEX Portal (Tissue expression)C17orf67
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P5P2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P5P2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P5P2
Splice isoforms : SwissVarQ0P5P2
PhosPhoSitePlusQ0P5P2
Domains : Interpro (EBI)DUF4543   
Domain families : Pfam (Sanger)DUF4543 (PF15076)   
Domain families : Pfam (NCBI)pfam15076   
Conserved Domain (NCBI)C17orf67
DMDM Disease mutations339210
Blocks (Seattle)C17orf67
SuperfamilyQ0P5P2
Human Protein AtlasENSG00000214226
Peptide AtlasQ0P5P2
IPIIPI00787011   
Protein Interaction databases
DIP (DOE-UCLA)Q0P5P2
IntAct (EBI)Q0P5P2
FunCoupENSG00000214226
BioGRIDC17orf67
STRING (EMBL)C17orf67
ZODIACC17orf67
Ontologies - Pathways
QuickGOQ0P5P2
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkC17orf67
Atlas of Cancer Signalling NetworkC17orf67
Wikipedia pathwaysC17orf67
Orthology - Evolution
OrthoDB339210
GeneTree (enSembl)ENSG00000214226
Phylogenetic Trees/Animal Genes : TreeFamC17orf67
HOVERGENQ0P5P2
HOGENOMQ0P5P2
Homologs : HomoloGeneC17orf67
Homology/Alignments : Family Browser (UCSC)C17orf67
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf67 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf67
dbVarC17orf67
ClinVarC17orf67
1000_GenomesC17orf67 
Exome Variant ServerC17orf67
ExAC (Exome Aggregation Consortium)C17orf67 (select the gene name)
Genetic variants : HAPMAP339210
Genomic Variants (DGV)C17orf67 [DGVbeta]
DECIPHERC17orf67 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf67 
Mutations
ICGC Data PortalC17orf67 
TCGA Data PortalC17orf67 
Broad Tumor PortalC17orf67
OASIS PortalC17orf67 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf67  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf67
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf67
DgiDB (Drug Gene Interaction Database)C17orf67
DoCM (Curated mutations)C17orf67 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf67 (select a term)
intoGenC17orf67
Cancer3DC17orf67(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf67
Genetic Testing Registry C17orf67
NextProtQ0P5P2 [Medical]
TSGene339210
GENETestsC17orf67
Huge Navigator C17orf67 [HugePedia]
snp3D : Map Gene to Disease339210
BioCentury BCIQC17orf67
ClinGenC17orf67
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339210
Chemical/Pharm GKB GenePA142672250
Clinical trialC17orf67
Miscellaneous
canSAR (ICR)C17orf67 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf67
EVEXC17orf67
GoPubMedC17orf67
iHOPC17orf67
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:02:47 CEST 2017

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