Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

C17orf75 (chromosome 17 open reading frame 75)

Identity

Alias_symbol (synonym)NJMU-R1
SRI2
Other alias
HGNC (Hugo) C17orf75
LocusID (NCBI) 64149
Atlas_Id 41539
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 30655460 and ends at 30669228 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C17orf75 (17q11.2) / TOP2A (17q21.2)ZNF207 (17q11.2) / C17orf75 (17q11.2)C17orf75 17q11.2 / TOP2A 17q21.2
ZNF207 17q11.2 / C17orf75 17q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf75   30173
Cards
Entrez_Gene (NCBI)C17orf75  64149  chromosome 17 open reading frame 75
AliasesNJMU-R1
GeneCards (Weizmann)C17orf75
Ensembl hg19 (Hinxton)ENSG00000108666 [Gene_View]  chr17:30655460-30669228 [Contig_View]  C17orf75 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108666 [Gene_View]  chr17:30655460-30669228 [Contig_View]  C17orf75 [Vega]
ICGC DataPortalENSG00000108666
TCGA cBioPortalC17orf75
AceView (NCBI)C17orf75
Genatlas (Paris)C17orf75
WikiGenes64149
SOURCE (Princeton)C17orf75
Genetics Home Reference (NIH)C17orf75
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf75  -     chr17:30655460-30669228 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf75  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblC17orf75 - 17q11.2 [CytoView hg19]  C17orf75 - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIC17orf75 [Mapview hg19]  C17orf75 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB062437 AF052093 AF305686 BC026017 BC035715
RefSeq transcript (Entrez)NM_022344
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf75
Cluster EST : UnigeneHs.655257 [ NCBI ]
CGAP (NCI)Hs.655257
Alternative Splicing GalleryENSG00000108666
Gene ExpressionC17orf75 [ NCBI-GEO ]   C17orf75 [ EBI - ARRAY_EXPRESS ]   C17orf75 [ SEEK ]   C17orf75 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf75 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64149
GTEX Portal (Tissue expression)C17orf75
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAS0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAS0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAS0
Splice isoforms : SwissVarQ9HAS0
PhosPhoSitePlusQ9HAS0
Domains : Interpro (EBI)Njmu-R1   
Domain families : Pfam (Sanger)Njmu-R1 (PF15053)   
Domain families : Pfam (NCBI)pfam15053   
Conserved Domain (NCBI)C17orf75
DMDM Disease mutations64149
Blocks (Seattle)C17orf75
SuperfamilyQ9HAS0
Human Protein AtlasENSG00000108666
Peptide AtlasQ9HAS0
HPRD11392
IPIIPI00029473   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAS0
IntAct (EBI)Q9HAS0
FunCoupENSG00000108666
BioGRIDC17orf75
STRING (EMBL)C17orf75
ZODIACC17orf75
Ontologies - Pathways
QuickGOQ9HAS0
Ontology : AmiGOmolecular_function  cellular_component  
Ontology : EGO-EBImolecular_function  cellular_component  
NDEx NetworkC17orf75
Atlas of Cancer Signalling NetworkC17orf75
Wikipedia pathwaysC17orf75
Orthology - Evolution
OrthoDB64149
GeneTree (enSembl)ENSG00000108666
Phylogenetic Trees/Animal Genes : TreeFamC17orf75
HOVERGENQ9HAS0
HOGENOMQ9HAS0
Homologs : HomoloGeneC17orf75
Homology/Alignments : Family Browser (UCSC)C17orf75
Gene fusions - Rearrangements
Fusion : MitelmanC17orf75/TOP2A [17q11.2/17q21.2]  
Fusion : MitelmanZNF207/C17orf75 [17q11.2/17q11.2]  [t(17;17)(q11;q11)]  
Fusion: TCGAC17orf75 17q11.2 TOP2A 17q21.2 BRCA
Fusion: TCGAZNF207 17q11.2 C17orf75 17q11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf75 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf75
dbVarC17orf75
ClinVarC17orf75
1000_GenomesC17orf75 
Exome Variant ServerC17orf75
ExAC (Exome Aggregation Consortium)C17orf75 (select the gene name)
Genetic variants : HAPMAP64149
Genomic Variants (DGV)C17orf75 [DGVbeta]
DECIPHER (Syndromes)17:30655460-30669228  ENSG00000108666
CONAN: Copy Number AnalysisC17orf75 
Mutations
ICGC Data PortalC17orf75 
TCGA Data PortalC17orf75 
Broad Tumor PortalC17orf75
OASIS PortalC17orf75 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf75  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf75
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf75
DgiDB (Drug Gene Interaction Database)C17orf75
DoCM (Curated mutations)C17orf75 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf75 (select a term)
intoGenC17orf75
Cancer3DC17orf75(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf75
Genetic Testing Registry C17orf75
NextProtQ9HAS0 [Medical]
TSGene64149
GENETestsC17orf75
Huge Navigator C17orf75 [HugePedia]
snp3D : Map Gene to Disease64149
BioCentury BCIQC17orf75
ClinGenC17orf75
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64149
Chemical/Pharm GKB GenePA142672223
Clinical trialC17orf75
Miscellaneous
canSAR (ICR)C17orf75 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf75
EVEXC17orf75
GoPubMedC17orf75
iHOPC17orf75
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:58:03 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.