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C17orf77 (chromosome 17 open reading frame 77)

Identity

Alias_symbol (synonym)FLJ31882
Other alias-
HGNC (Hugo) C17orf77
LocusID (NCBI) 146723
Atlas_Id 61000
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 72580818 and ends at 72590348 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UNK (17q25.1) / C17orf77 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf77   26480
Cards
Entrez_Gene (NCBI)C17orf77  146723  chromosome 17 open reading frame 77
Aliases
GeneCards (Weizmann)C17orf77
Ensembl hg19 (Hinxton) [Gene_View]  chr17:72580818-72590348 [Contig_View]  C17orf77 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:72580818-72590348 [Contig_View]  C17orf77 [Vega]
TCGA cBioPortalC17orf77
AceView (NCBI)C17orf77
Genatlas (Paris)C17orf77
WikiGenes146723
SOURCE (Princeton)C17orf77
Genetics Home Reference (NIH)C17orf77
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf77  -     chr17:72580818-72590348 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf77  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblC17orf77 - 17q25.1 [CytoView hg19]  C17orf77 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIC17orf77 [Mapview hg19]  C17orf77 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056444 BC148444 BC153033 BX957212 LN608656
RefSeq transcript (Entrez)NM_001302809 NM_152460
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf77
Cluster EST : UnigeneHs.350775 [ NCBI ]
CGAP (NCI)Hs.350775
Gene ExpressionC17orf77 [ NCBI-GEO ]   C17orf77 [ EBI - ARRAY_EXPRESS ]   C17orf77 [ SEEK ]   C17orf77 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf77 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146723
GTEX Portal (Tissue expression)C17orf77
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MU5
Splice isoforms : SwissVarQ96MU5
PhosPhoSitePlusQ96MU5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf77
DMDM Disease mutations146723
Blocks (Seattle)C17orf77
SuperfamilyQ96MU5
Peptide AtlasQ96MU5
HPRD08112
IPIIPI00043400   IPI00985423   
Protein Interaction databases
DIP (DOE-UCLA)Q96MU5
IntAct (EBI)Q96MU5
BioGRIDC17orf77
STRING (EMBL)C17orf77
ZODIACC17orf77
Ontologies - Pathways
QuickGOQ96MU5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkC17orf77
Atlas of Cancer Signalling NetworkC17orf77
Wikipedia pathwaysC17orf77
Orthology - Evolution
OrthoDB146723
Phylogenetic Trees/Animal Genes : TreeFamC17orf77
HOVERGENQ96MU5
HOGENOMQ96MU5
Homologs : HomoloGeneC17orf77
Homology/Alignments : Family Browser (UCSC)C17orf77
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf77 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf77
dbVarC17orf77
ClinVarC17orf77
1000_GenomesC17orf77 
Exome Variant ServerC17orf77
ExAC (Exome Aggregation Consortium)C17orf77 (select the gene name)
Genetic variants : HAPMAP146723
Genomic Variants (DGV)C17orf77 [DGVbeta]
DECIPHER (Syndromes)17:72580818-72590348  
CONAN: Copy Number AnalysisC17orf77 
Mutations
ICGC Data PortalC17orf77 
TCGA Data PortalC17orf77 
Broad Tumor PortalC17orf77
OASIS PortalC17orf77 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf77  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf77
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf77
DgiDB (Drug Gene Interaction Database)C17orf77
DoCM (Curated mutations)C17orf77 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf77 (select a term)
intoGenC17orf77
Cancer3DC17orf77(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf77
Genetic Testing Registry C17orf77
NextProtQ96MU5 [Medical]
TSGene146723
GENETestsC17orf77
Huge Navigator C17orf77 [HugePedia]
snp3D : Map Gene to Disease146723
BioCentury BCIQC17orf77
ClinGenC17orf77
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146723
Chemical/Pharm GKB GenePA143485401
Clinical trialC17orf77
Miscellaneous
canSAR (ICR)C17orf77 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf77
EVEXC17orf77
GoPubMedC17orf77
iHOPC17orf77
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:44 CET 2017

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