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C17orf78 (chromosome 17 open reading frame 78)

Identity

Alias_symbol (synonym)FLJ39647
Other alias-
HGNC (Hugo) C17orf78
LocusID (NCBI) 284099
Atlas_Id 61001
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 35732985 and ends at 35749662 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNF135 (17q11.2) / C17orf78 (17q12)TADA2A (17q12) / C17orf78 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf78   26831
Cards
Entrez_Gene (NCBI)C17orf78  284099  chromosome 17 open reading frame 78
Aliases
GeneCards (Weizmann)C17orf78
Ensembl hg19 (Hinxton)ENSG00000278505 [Gene_View]  chr17:35732985-35749662 [Contig_View]  C17orf78 [Vega]
Ensembl hg38 (Hinxton)ENSG00000278505 [Gene_View]  chr17:35732985-35749662 [Contig_View]  C17orf78 [Vega]
ICGC DataPortalENSG00000278505
TCGA cBioPortalC17orf78
AceView (NCBI)C17orf78
Genatlas (Paris)C17orf78
WikiGenes284099
SOURCE (Princeton)C17orf78
Genetics Home Reference (NIH)C17orf78
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf78  -     chr17:35732985-35749662 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf78  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblC17orf78 - 17q12 [CytoView hg19]  C17orf78 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIC17orf78 [Mapview hg19]  C17orf78 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096966 BC034672 HQ447105
RefSeq transcript (Entrez)NM_173625
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_023295 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf78
Cluster EST : UnigeneHs.439154 [ NCBI ]
CGAP (NCI)Hs.439154
Alternative Splicing GalleryENSG00000278505
Gene ExpressionC17orf78 [ NCBI-GEO ]   C17orf78 [ EBI - ARRAY_EXPRESS ]   C17orf78 [ SEEK ]   C17orf78 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf78 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284099
GTEX Portal (Tissue expression)C17orf78
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4C9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4C9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4C9
Splice isoforms : SwissVarQ8N4C9
PhosPhoSitePlusQ8N4C9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf78
DMDM Disease mutations284099
Blocks (Seattle)C17orf78
SuperfamilyQ8N4C9
Human Protein AtlasENSG00000278505
Peptide AtlasQ8N4C9
HPRD08262
IPIIPI00296640   IPI00167446   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4C9
IntAct (EBI)Q8N4C9
FunCoupENSG00000278505
BioGRIDC17orf78
STRING (EMBL)C17orf78
ZODIACC17orf78
Ontologies - Pathways
QuickGOQ8N4C9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkC17orf78
Atlas of Cancer Signalling NetworkC17orf78
Wikipedia pathwaysC17orf78
Orthology - Evolution
OrthoDB284099
GeneTree (enSembl)ENSG00000278505
Phylogenetic Trees/Animal Genes : TreeFamC17orf78
HOVERGENQ8N4C9
HOGENOMQ8N4C9
Homologs : HomoloGeneC17orf78
Homology/Alignments : Family Browser (UCSC)C17orf78
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf78 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf78
dbVarC17orf78
ClinVarC17orf78
1000_GenomesC17orf78 
Exome Variant ServerC17orf78
ExAC (Exome Aggregation Consortium)C17orf78 (select the gene name)
Genetic variants : HAPMAP284099
Genomic Variants (DGV)C17orf78 [DGVbeta]
DECIPHER (Syndromes)17:35732985-35749662  ENSG00000278505
CONAN: Copy Number AnalysisC17orf78 
Mutations
ICGC Data PortalC17orf78 
TCGA Data PortalC17orf78 
Broad Tumor PortalC17orf78
OASIS PortalC17orf78 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf78  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf78
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf78
DgiDB (Drug Gene Interaction Database)C17orf78
DoCM (Curated mutations)C17orf78 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf78 (select a term)
intoGenC17orf78
Cancer3DC17orf78(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf78
Genetic Testing Registry C17orf78
NextProtQ8N4C9 [Medical]
TSGene284099
GENETestsC17orf78
Huge Navigator C17orf78 [HugePedia]
snp3D : Map Gene to Disease284099
BioCentury BCIQC17orf78
ClinGenC17orf78
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284099
Chemical/Pharm GKB GenePA143485402
Clinical trialC17orf78
Miscellaneous
canSAR (ICR)C17orf78 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf78
EVEXC17orf78
GoPubMedC17orf78
iHOPC17orf78
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:56:44 CET 2017

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