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C17orf82 (chromosome 17 open reading frame 82)

Identity

Other alias-
HGNC (Hugo) C17orf82
LocusID (NCBI) 388407
Atlas_Id 61002
Location 17q23.2  [Link to chromosome band 17q23]
Location_base_pair Starts at 61411751 and ends at 61413280 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf82   32699
Cards
Entrez_Gene (NCBI)C17orf82  388407  chromosome 17 open reading frame 82
Aliases
GeneCards (Weizmann)C17orf82
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:61411751-61413280 [Contig_View]  C17orf82 [Vega]
TCGA cBioPortalC17orf82
AceView (NCBI)C17orf82
Genatlas (Paris)C17orf82
WikiGenes388407
SOURCE (Princeton)C17orf82
Genetics Home Reference (NIH)C17orf82
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf82  -     chr17:61411751-61413280 +  17q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf82  -     17q23.2   [Description]    (hg19-Feb_2009)
EnsemblC17orf82 - 17q23.2 [CytoView hg19]  C17orf82 - 17q23.2 [CytoView hg38]
Mapping of homologs : NCBIC17orf82 [Mapview hg19]  C17orf82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC046200 BI818440 HQ448590
RefSeq transcript (Entrez)NM_203425
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf82
Cluster EST : UnigeneHs.434459 [ NCBI ]
CGAP (NCI)Hs.434459
Gene ExpressionC17orf82 [ NCBI-GEO ]   C17orf82 [ EBI - ARRAY_EXPRESS ]   C17orf82 [ SEEK ]   C17orf82 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388407
GTEX Portal (Tissue expression)C17orf82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86X59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86X59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86X59
Splice isoforms : SwissVarQ86X59
PhosPhoSitePlusQ86X59
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf82
DMDM Disease mutations388407
Blocks (Seattle)C17orf82
SuperfamilyQ86X59
Peptide AtlasQ86X59
HPRD14202
IPIIPI00384492   
Protein Interaction databases
DIP (DOE-UCLA)Q86X59
IntAct (EBI)Q86X59
BioGRIDC17orf82
STRING (EMBL)C17orf82
ZODIACC17orf82
Ontologies - Pathways
QuickGOQ86X59
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC17orf82
Atlas of Cancer Signalling NetworkC17orf82
Wikipedia pathwaysC17orf82
Orthology - Evolution
OrthoDB388407
Phylogenetic Trees/Animal Genes : TreeFamC17orf82
HOVERGENQ86X59
HOGENOMQ86X59
Homologs : HomoloGeneC17orf82
Homology/Alignments : Family Browser (UCSC)C17orf82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf82
dbVarC17orf82
ClinVarC17orf82
1000_GenomesC17orf82 
Exome Variant ServerC17orf82
ExAC (Exome Aggregation Consortium)C17orf82 (select the gene name)
Genetic variants : HAPMAP388407
Genomic Variants (DGV)C17orf82 [DGVbeta]
DECIPHERC17orf82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf82 
Mutations
ICGC Data PortalC17orf82 
TCGA Data PortalC17orf82 
Broad Tumor PortalC17orf82
OASIS PortalC17orf82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf82
DgiDB (Drug Gene Interaction Database)C17orf82
DoCM (Curated mutations)C17orf82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf82 (select a term)
intoGenC17orf82
Cancer3DC17orf82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf82
Genetic Testing Registry C17orf82
NextProtQ86X59 [Medical]
TSGene388407
GENETestsC17orf82
Target ValidationC17orf82
Huge Navigator C17orf82 [HugePedia]
snp3D : Map Gene to Disease388407
BioCentury BCIQC17orf82
ClinGenC17orf82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388407
Chemical/Pharm GKB GenePA145008807
Clinical trialC17orf82
Miscellaneous
canSAR (ICR)C17orf82 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf82
EVEXC17orf82
GoPubMedC17orf82
iHOPC17orf82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:55 CEST 2017

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