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C17orf85 (chromosome 17 open reading frame 85)

Identity

Other aliasELG
HSA277841
HGNC (Hugo) C17orf85
LocusID (NCBI) 55421
Atlas_Id 61003
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3710045 and ends at 3749545 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf85   24612
Cards
Entrez_Gene (NCBI)C17orf85  55421  chromosome 17 open reading frame 85
AliasesELG; HSA277841
GeneCards (Weizmann)C17orf85
Ensembl hg19 (Hinxton) [Gene_View]  chr17:3710045-3749545 [Contig_View]  C17orf85 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:3710045-3749545 [Contig_View]  C17orf85 [Vega]
TCGA cBioPortalC17orf85
AceView (NCBI)C17orf85
Genatlas (Paris)C17orf85
WikiGenes55421
SOURCE (Princeton)C17orf85
Genetics Home Reference (NIH)C17orf85
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf85  -     chr17:3710045-3749545 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf85  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblC17orf85 - 17p13.2 [CytoView hg19]  C17orf85 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIC17orf85 [Mapview hg19]  C17orf85 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ277841 AK056724 AK125048 AK223470 BC010707
RefSeq transcript (Entrez)NM_001114118 NM_018553
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)C17orf85
Cluster EST : UnigeneHs.120963 [ NCBI ]
CGAP (NCI)Hs.120963
Gene ExpressionC17orf85 [ NCBI-GEO ]   C17orf85 [ EBI - ARRAY_EXPRESS ]   C17orf85 [ SEEK ]   C17orf85 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55421
GTEX Portal (Tissue expression)C17orf85
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53F19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53F19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53F19
Splice isoforms : SwissVarQ53F19
PhosPhoSitePlusQ53F19
Domains : Interpro (EBI)DUF2414    Nucleotide-bd_a/b_plait   
Domain families : Pfam (Sanger)DUF2414 (PF10309)   
Domain families : Pfam (NCBI)pfam10309   
Conserved Domain (NCBI)C17orf85
DMDM Disease mutations55421
Blocks (Seattle)C17orf85
SuperfamilyQ53F19
Peptide AtlasQ53F19
HPRD17116
IPIIPI00782974   IPI00032056   
Protein Interaction databases
DIP (DOE-UCLA)Q53F19
IntAct (EBI)Q53F19
BioGRIDC17orf85
STRING (EMBL)C17orf85
ZODIACC17orf85
Ontologies - Pathways
QuickGOQ53F19
Ontology : AmiGOnucleotide binding  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  poly(A) RNA binding  
NDEx NetworkC17orf85
Atlas of Cancer Signalling NetworkC17orf85
Wikipedia pathwaysC17orf85
Orthology - Evolution
OrthoDB55421
Phylogenetic Trees/Animal Genes : TreeFamC17orf85
HOVERGENQ53F19
HOGENOMQ53F19
Homologs : HomoloGeneC17orf85
Homology/Alignments : Family Browser (UCSC)C17orf85
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf85
dbVarC17orf85
ClinVarC17orf85
1000_GenomesC17orf85 
Exome Variant ServerC17orf85
ExAC (Exome Aggregation Consortium)C17orf85 (select the gene name)
Genetic variants : HAPMAP55421
Genomic Variants (DGV)C17orf85 [DGVbeta]
DECIPHER (Syndromes)17:3710045-3749545  
CONAN: Copy Number AnalysisC17orf85 
Mutations
ICGC Data PortalC17orf85 
TCGA Data PortalC17orf85 
Broad Tumor PortalC17orf85
OASIS PortalC17orf85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf85
DgiDB (Drug Gene Interaction Database)C17orf85
DoCM (Curated mutations)C17orf85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf85 (select a term)
intoGenC17orf85
Cancer3DC17orf85(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf85
Genetic Testing Registry C17orf85
NextProtQ53F19 [Medical]
TSGene55421
GENETestsC17orf85
Huge Navigator C17orf85 [HugePedia]
snp3D : Map Gene to Disease55421
BioCentury BCIQC17orf85
ClinGenC17orf85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55421
Chemical/Pharm GKB GenePA145149545
Clinical trialC17orf85
Miscellaneous
canSAR (ICR)C17orf85 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf85
EVEXC17orf85
GoPubMedC17orf85
iHOPC17orf85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:44 CET 2017

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