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C17orf89 (chromosome 17 open reading frame 89)

Identity

Other alias-
HGNC (Hugo) C17orf89
LocusID (NCBI) 284184
Atlas_Id 61004
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 79213111 and ends at 79215098 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C17orf89 (17q25.3) / ANKLE2 (12q24.33)C17orf89 (17q25.3) / C17orf89 (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf89   33551
Cards
Entrez_Gene (NCBI)C17orf89  284184  chromosome 17 open reading frame 89
Aliases
GeneCards (Weizmann)C17orf89
Ensembl hg19 (Hinxton)ENSG00000224877 [Gene_View]  chr17:79213111-79215098 [Contig_View]  C17orf89 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224877 [Gene_View]  chr17:79213111-79215098 [Contig_View]  C17orf89 [Vega]
ICGC DataPortalENSG00000224877
TCGA cBioPortalC17orf89
AceView (NCBI)C17orf89
Genatlas (Paris)C17orf89
WikiGenes284184
SOURCE (Princeton)C17orf89
Genetics Home Reference (NIH)C17orf89
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf89  -     chr17:79213111-79215098 +  17q25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf89  -     17q25.3   [Description]    (hg38-Dec_2013)
EnsemblC17orf89 - 17q25.3 [CytoView hg19]  C17orf89 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIC17orf89 [Mapview hg19]  C17orf89 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA534550 BC079831 BC127837 BC141912
RefSeq transcript (Entrez)NM_001086521
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf89
Cluster EST : UnigeneHs.356545 [ NCBI ]
CGAP (NCI)Hs.356545
Alternative Splicing GalleryENSG00000224877
Gene ExpressionC17orf89 [ NCBI-GEO ]   C17orf89 [ EBI - ARRAY_EXPRESS ]   C17orf89 [ SEEK ]   C17orf89 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf89 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284184
GTEX Portal (Tissue expression)C17orf89
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1L188   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1L188  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1L188
Splice isoforms : SwissVarA1L188
PhosPhoSitePlusA1L188
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C17orf89
DMDM Disease mutations284184
Blocks (Seattle)C17orf89
SuperfamilyA1L188
Human Protein AtlasENSG00000224877
Peptide AtlasA1L188
IPIIPI00807537   
Protein Interaction databases
DIP (DOE-UCLA)A1L188
IntAct (EBI)A1L188
FunCoupENSG00000224877
BioGRIDC17orf89
STRING (EMBL)C17orf89
ZODIACC17orf89
Ontologies - Pathways
QuickGOA1L188
Ontology : AmiGOmitochondrion  
Ontology : EGO-EBImitochondrion  
NDEx NetworkC17orf89
Atlas of Cancer Signalling NetworkC17orf89
Wikipedia pathwaysC17orf89
Orthology - Evolution
OrthoDB284184
GeneTree (enSembl)ENSG00000224877
Phylogenetic Trees/Animal Genes : TreeFamC17orf89
HOVERGENA1L188
HOGENOMA1L188
Homologs : HomoloGeneC17orf89
Homology/Alignments : Family Browser (UCSC)C17orf89
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf89 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf89
dbVarC17orf89
ClinVarC17orf89
1000_GenomesC17orf89 
Exome Variant ServerC17orf89
ExAC (Exome Aggregation Consortium)C17orf89 (select the gene name)
Genetic variants : HAPMAP284184
Genomic Variants (DGV)C17orf89 [DGVbeta]
DECIPHER (Syndromes)17:79213111-79215098  ENSG00000224877
CONAN: Copy Number AnalysisC17orf89 
Mutations
ICGC Data PortalC17orf89 
TCGA Data PortalC17orf89 
Broad Tumor PortalC17orf89
OASIS PortalC17orf89 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf89  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDC17orf89
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf89
DgiDB (Drug Gene Interaction Database)C17orf89
DoCM (Curated mutations)C17orf89 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf89 (select a term)
intoGenC17orf89
Cancer3DC17orf89(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf89
Genetic Testing Registry C17orf89
NextProtA1L188 [Medical]
TSGene284184
GENETestsC17orf89
Huge Navigator C17orf89 [HugePedia]
snp3D : Map Gene to Disease284184
BioCentury BCIQC17orf89
ClinGenC17orf89
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284184
Chemical/Pharm GKB GenePA162378532
Clinical trialC17orf89
Miscellaneous
canSAR (ICR)C17orf89 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf89
EVEXC17orf89
GoPubMedC17orf89
iHOPC17orf89
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:44 CET 2017

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