Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf96 (chromosome 17 open reading frame 96)

Identity

Alias_symbol (synonym)LOC100170841
PRR28
Other alias
HGNC (Hugo) C17orf96
LocusID (NCBI) 100170841
Atlas_Id 61005
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36827959 and ends at 36831187 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf96   34493
Cards
Entrez_Gene (NCBI)C17orf96  100170841  chromosome 17 open reading frame 96
AliasesPRR28
GeneCards (Weizmann)C17orf96
Ensembl hg19 (Hinxton)ENSG00000273604 [Gene_View]  chr17:36827959-36831187 [Contig_View]  C17orf96 [Vega]
Ensembl hg38 (Hinxton)ENSG00000273604 [Gene_View]  chr17:36827959-36831187 [Contig_View]  C17orf96 [Vega]
ICGC DataPortalENSG00000273604
TCGA cBioPortalC17orf96
AceView (NCBI)C17orf96
Genatlas (Paris)C17orf96
WikiGenes100170841
SOURCE (Princeton)C17orf96
Genetics Home Reference (NIH)C17orf96
Genomic and cartography
GoldenPath hg19 (UCSC)C17orf96  -     chr17:36827959-36831187 -  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)C17orf96  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblC17orf96 - 17q12 [CytoView hg19]  C17orf96 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIC17orf96 [Mapview hg19]  C17orf96 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001130677
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NT_187614 NW_004929407
Consensus coding sequences : CCDS (NCBI)C17orf96
Cluster EST : UnigeneHs.445574 [ NCBI ]
CGAP (NCI)Hs.445574
Alternative Splicing GalleryENSG00000273604
Gene ExpressionC17orf96 [ NCBI-GEO ]   C17orf96 [ EBI - ARRAY_EXPRESS ]   C17orf96 [ SEEK ]   C17orf96 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf96 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100170841
GTEX Portal (Tissue expression)C17orf96
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHQ4
Splice isoforms : SwissVarA6NHQ4
PhosPhoSitePlusA6NHQ4
Domains : Interpro (EBI)DUF4584   
Domain families : Pfam (Sanger)DUF4584 (PF15223)   
Domain families : Pfam (NCBI)pfam15223   
Conserved Domain (NCBI)C17orf96
DMDM Disease mutations100170841
Blocks (Seattle)C17orf96
SuperfamilyA6NHQ4
Human Protein AtlasENSG00000273604
Peptide AtlasA6NHQ4
IPIIPI00246649   
Protein Interaction databases
DIP (DOE-UCLA)A6NHQ4
IntAct (EBI)A6NHQ4
FunCoupENSG00000273604
BioGRIDC17orf96
STRING (EMBL)C17orf96
ZODIACC17orf96
Ontologies - Pathways
QuickGOA6NHQ4
Ontology : AmiGOneuron fate commitment  
Ontology : EGO-EBIneuron fate commitment  
NDEx NetworkC17orf96
Atlas of Cancer Signalling NetworkC17orf96
Wikipedia pathwaysC17orf96
Orthology - Evolution
OrthoDB100170841
GeneTree (enSembl)ENSG00000273604
Phylogenetic Trees/Animal Genes : TreeFamC17orf96
HOVERGENA6NHQ4
HOGENOMA6NHQ4
Homologs : HomoloGeneC17orf96
Homology/Alignments : Family Browser (UCSC)C17orf96
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf96 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf96
dbVarC17orf96
ClinVarC17orf96
1000_GenomesC17orf96 
Exome Variant ServerC17orf96
ExAC (Exome Aggregation Consortium)C17orf96 (select the gene name)
Genetic variants : HAPMAP100170841
Genomic Variants (DGV)C17orf96 [DGVbeta]
DECIPHER (Syndromes)17:36827959-36831187  ENSG00000273604
CONAN: Copy Number AnalysisC17orf96 
Mutations
ICGC Data PortalC17orf96 
TCGA Data PortalC17orf96 
Broad Tumor PortalC17orf96
OASIS PortalC17orf96 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC17orf96
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf96
DgiDB (Drug Gene Interaction Database)C17orf96
DoCM (Curated mutations)C17orf96 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf96 (select a term)
intoGenC17orf96
Cancer3DC17orf96(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenC17orf96
Genetic Testing Registry C17orf96
NextProtA6NHQ4 [Medical]
TSGene100170841
GENETestsC17orf96
Huge Navigator C17orf96 [HugePedia]
snp3D : Map Gene to Disease100170841
BioCentury BCIQC17orf96
ClinGenC17orf96
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100170841
Chemical/Pharm GKB GenePA162378581
Clinical trialC17orf96
Miscellaneous
canSAR (ICR)C17orf96 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf96
EVEXC17orf96
GoPubMedC17orf96
iHOPC17orf96
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:56:45 CET 2017

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